Variant report

Variant	rs2025394
Chromosome Location	chr9:9736587-9736588
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10122890	0.82[CHB][hapmap]
rs10125050	0.82[CHB][hapmap]
rs10511528	1.00[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap]
rs10816166	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10977935	0.91[YRI][hapmap]
rs12336958	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs12339307	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12346500	0.90[YRI][hapmap]
rs12346850	0.97[ASN][1000 genomes]
rs12350124	0.97[ASN][1000 genomes]
rs12350194	0.97[ASN][1000 genomes]
rs12353171	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1323797	0.85[CEU][hapmap];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1323800	1.00[JPT][hapmap]
rs1323801	0.96[CEU][hapmap]
rs1359174	0.85[CEU][hapmap]
rs1359176	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1408123	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1408125	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1626530	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1629307	1.00[CEU][hapmap];0.91[TSI][hapmap]
rs1746790	0.84[CEU][hapmap];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1746791	0.85[CEU][hapmap];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1746792	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1746803	1.00[CEU][hapmap]
rs1746806	1.00[CEU][hapmap]
rs1746809	1.00[CEU][hapmap]
rs1746810	0.96[CEU][hapmap];0.82[CHB][hapmap];0.93[TSI][hapmap]
rs1768877	0.81[CEU][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1768884	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1768885	0.88[CEU][hapmap];0.93[TSI][hapmap]
rs1768891	0.81[CEU][hapmap];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1768892	0.85[CEU][hapmap];0.81[TSI][hapmap]
rs1768893	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1934267	0.81[CEU][hapmap];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2025392	0.82[CHB][hapmap];0.91[MEX][hapmap]
rs2031267	0.92[ASN][1000 genomes]
rs2225979	0.91[MEX][hapmap]
rs2263141	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2476584	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2761695	1.00[CEU][hapmap]
rs2761696	1.00[CEU][hapmap]
rs2761699	0.82[CHB][hapmap];1.00[YRI][hapmap]
rs2761700	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2761702	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2761703	0.85[CEU][hapmap]
rs2761704	0.85[CEU][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2761705	0.85[CEU][hapmap];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2761706	0.85[CEU][hapmap];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2761707	0.85[CEU][hapmap];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2761708	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2821461	0.82[CHB][hapmap]
rs2821462	1.00[CEU][hapmap]
rs2821463	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap]
rs2821465	1.00[CEU][hapmap]
rs2821466	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2821468	1.00[CEU][hapmap]
rs3118010	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3118011	0.85[CEU][hapmap]
rs4273904	0.83[MEX][hapmap];0.84[MKK][hapmap];0.91[YRI][hapmap]
rs4552966	0.91[YRI][hapmap]
rs6477405	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.85[JPT][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.91[YRI][hapmap]
rs6477408	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6477411	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs6477412	0.82[CHB][hapmap];0.90[YRI][hapmap]
rs6477414	0.91[MEX][hapmap]
rs7027885	0.91[YRI][hapmap]
rs7036733	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7048068	1.00[JPT][hapmap]
rs7852298	0.82[CHB][hapmap]
rs7863452	1.00[JPT][hapmap]
rs7873394	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613308	chr9:9409606-9750139	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1033808	chr9:9431799-9777960	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv892264	chr9:9440838-9796577	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv892265	chr9:9476425-9796116	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv892270	chr9:9591059-9860735	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv613319	chr9:9630855-9778653	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1028772	chr9:9631694-9779358	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv2422381	chr9:9647540-9887820	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1020468	chr9:9658670-9780975	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv539983	chr9:9658670-9780975	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv892274	chr9:9687742-9787587	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv613320	chr9:9711904-9750139	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv526471	chr9:9718066-9832245	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv613321	chr9:9724976-9758609	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv1034236	chr9:9728895-9779358	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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