Variant report
| Variant | rs7852298 |
|---|---|
| Chromosome Location | chr9:9732761-9732762 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:63)
| rs_ID | r2[population] |
|---|---|
| rs10122890 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10125050 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs10125726 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10511528 | 0.82[CHB][hapmap] |
| rs10816166 | 0.82[CHB][hapmap] |
| rs10977934 | 0.96[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs10977935 | 0.96[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap] |
| rs10977944 | 1.00[YRI][hapmap] |
| rs12336958 | 0.82[CHB][hapmap] |
| rs12346500 | 0.96[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap] |
| rs12353171 | 0.82[CHB][hapmap];1.00[YRI][hapmap] |
| rs1323797 | 1.00[YRI][hapmap] |
| rs1323801 | 1.00[YRI][hapmap] |
| rs1359174 | 1.00[YRI][hapmap] |
| rs1359176 | 0.82[CHB][hapmap] |
| rs1408123 | 0.82[CHB][hapmap];1.00[YRI][hapmap] |
| rs1408125 | 0.82[CHB][hapmap];1.00[YRI][hapmap] |
| rs1626530 | 0.82[CHB][hapmap];1.00[YRI][hapmap] |
| rs1629307 | 1.00[YRI][hapmap] |
| rs1746790 | 1.00[YRI][hapmap] |
| rs1746791 | 0.85[YRI][hapmap] |
| rs1746792 | 0.85[YRI][hapmap] |
| rs1746803 | 1.00[YRI][hapmap] |
| rs1746806 | 1.00[YRI][hapmap] |
| rs1746809 | 1.00[YRI][hapmap] |
| rs1768877 | 1.00[YRI][hapmap] |
| rs1768884 | 0.82[CHB][hapmap];1.00[YRI][hapmap] |
| rs1768885 | 1.00[YRI][hapmap] |
| rs1768891 | 0.85[YRI][hapmap] |
| rs1768892 | 0.85[YRI][hapmap] |
| rs1934267 | 1.00[YRI][hapmap] |
| rs2025392 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs2025394 | 0.82[CHB][hapmap] |
| rs2225979 | 0.92[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2263141 | 0.82[CHB][hapmap];1.00[YRI][hapmap] |
| rs2761695 | 1.00[YRI][hapmap] |
| rs2761696 | 1.00[YRI][hapmap] |
| rs2761699 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2761700 | 0.82[CHB][hapmap];1.00[YRI][hapmap] |
| rs2761702 | 0.82[CHB][hapmap];1.00[YRI][hapmap] |
| rs2761703 | 1.00[YRI][hapmap] |
| rs2761704 | 1.00[YRI][hapmap] |
| rs2761705 | 1.00[YRI][hapmap] |
| rs2761706 | 1.00[YRI][hapmap] |
| rs2761707 | 1.00[YRI][hapmap] |
| rs2761709 | 0.83[YRI][hapmap] |
| rs2821461 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs2821462 | 1.00[YRI][hapmap] |
| rs2821463 | 1.00[YRI][hapmap] |
| rs2821465 | 1.00[YRI][hapmap] |
| rs2821466 | 0.82[CHB][hapmap];1.00[YRI][hapmap] |
| rs2821468 | 1.00[YRI][hapmap] |
| rs3118010 | 0.82[CHB][hapmap];1.00[YRI][hapmap] |
| rs3118011 | 1.00[YRI][hapmap] |
| rs4273904 | 0.96[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap] |
| rs4552966 | 0.96[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap] |
| rs6477405 | 0.82[CHB][hapmap] |
| rs6477408 | 0.82[CHB][hapmap] |
| rs6477412 | 0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap] |
| rs6477414 | 0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs7027885 | 0.96[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap] |
| rs7047812 | 0.82[YRI][hapmap] |
| rs7873394 | 0.82[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv613308 | chr9:9409606-9750139 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1033808 | chr9:9431799-9777960 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv892264 | chr9:9440838-9796577 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv892265 | chr9:9476425-9796116 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv892270 | chr9:9591059-9860735 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 6 | nsv613319 | chr9:9630855-9778653 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 7 | nsv1028772 | chr9:9631694-9779358 | Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 8 | esv2422381 | chr9:9647540-9887820 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 9 | nsv1020468 | chr9:9658670-9780975 | Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 10 | nsv539983 | chr9:9658670-9780975 | Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 11 | nsv892274 | chr9:9687742-9787587 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 12 | nsv613320 | chr9:9711904-9750139 | ZNF genes & repeats Enhancers Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 13 | nsv526471 | chr9:9718066-9832245 | Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 14 | nsv613321 | chr9:9724976-9758609 | Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 15 | nsv1034236 | chr9:9728895-9779358 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
