Variant report

Variant	rs6477408
Chromosome Location	chr9:9720438-9720439
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10122890	0.82[CHB][hapmap]
rs10125050	0.82[CHB][hapmap]
rs10511528	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs10816166	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12336958	0.86[CEU][hapmap];0.82[CHB][hapmap];0.93[YRI][hapmap]
rs12339307	0.95[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12346850	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12350124	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12350194	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12353171	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1323797	0.94[ASN][1000 genomes]
rs1323800	1.00[JPT][hapmap]
rs1359176	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1408123	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1408125	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1626530	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1746790	0.94[ASN][1000 genomes]
rs1746791	0.94[ASN][1000 genomes]
rs1746792	0.94[ASN][1000 genomes]
rs1746810	0.82[CHB][hapmap]
rs1768877	0.97[ASN][1000 genomes]
rs1768884	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1768891	0.94[ASN][1000 genomes]
rs1768893	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1934267	0.95[ASN][1000 genomes]
rs2025392	0.82[CHB][hapmap]
rs2025394	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2031267	0.89[ASN][1000 genomes]
rs2263141	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2476584	0.94[ASN][1000 genomes]
rs2761699	0.82[CHB][hapmap]
rs2761700	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2761702	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2761704	0.97[ASN][1000 genomes]
rs2761705	0.97[ASN][1000 genomes]
rs2761706	0.97[ASN][1000 genomes]
rs2761707	0.94[ASN][1000 genomes]
rs2761708	0.94[ASN][1000 genomes]
rs2821461	0.82[CHB][hapmap]
rs2821463	0.82[CHB][hapmap]
rs2821466	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3118010	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6477405	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6477406	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs6477411	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.94[YRI][hapmap]
rs6477412	0.82[CHB][hapmap]
rs7036733	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7048068	1.00[JPT][hapmap]
rs7852298	0.82[CHB][hapmap]
rs7863452	1.00[JPT][hapmap]
rs7873394	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613308	chr9:9409606-9750139	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1033808	chr9:9431799-9777960	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv892264	chr9:9440838-9796577	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv892265	chr9:9476425-9796116	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv892270	chr9:9591059-9860735	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv613319	chr9:9630855-9778653	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1028772	chr9:9631694-9779358	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv2422381	chr9:9647540-9887820	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1020468	chr9:9658670-9780975	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv539983	chr9:9658670-9780975	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv892273	chr9:9673320-9730366	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
12	nsv892274	chr9:9687742-9787587	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv613320	chr9:9711904-9750139	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv526471	chr9:9718066-9832245	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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