Variant report

Variant	rs17695732
Chromosome Location	chr6:119091596-119091597
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119091223..119093581-chr6:119115948..119118630,2	MCF-7	breast:
2	chr6:119090089..119093226-chr6:119095000..119099014,4	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12192393	0.98[ASN][1000 genomes]
rs12525886	0.93[ASN][1000 genomes]
rs2145568	1.00[JPT][hapmap]
rs2275614	0.93[ASN][1000 genomes]
rs284921	1.00[JPT][hapmap]
rs65685	1.00[JPT][hapmap]
rs6929592	1.00[CHB][hapmap]
rs6934262	1.00[CHB][hapmap]
rs706972	1.00[JPT][hapmap]
rs7746114	1.00[JPT][hapmap]
rs7766260	1.00[JPT][hapmap]
rs7773212	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs794602	1.00[JPT][hapmap]
rs794609	1.00[JPT][hapmap]
rs794610	1.00[JPT][hapmap]
rs794613	1.00[JPT][hapmap]
rs794615	1.00[JPT][hapmap]
rs9374745	1.00[JPT][hapmap]
rs9374749	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9374750	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap];0.93[ASN][1000 genomes]
rs9374758	1.00[JPT][hapmap]
rs9385056	1.00[JPT][hapmap]
rs9401108	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1025403	chr6:118635123-119122551	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1027444	chr6:118687556-119121660	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv538428	chr6:118687556-119121660	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv949321	chr6:118692304-119137658	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv948980	chr6:118772508-119137658	Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv604559	chr6:118786486-119113317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv1020405	chr6:118786586-119241006	ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
9	nsv830788	chr6:119014021-119143652	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1023826	chr6:119026481-119221408	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
11	nsv886568	chr6:119044453-119132164	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv886569	chr6:119055873-119132164	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	esv3333814	chr6:119078525-119100108	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119076800-119098000	Weak transcription	Psoas Muscle	Psoas
2	chr6:119078000-119093200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:119089800-119092000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:119090400-119092000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr6:119090400-119093000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:119090400-119093800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:119090400-119093800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr6:119090400-119094800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr6:119090400-119094800	Weak transcription	Placenta	Placenta
10	chr6:119090600-119091600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:119090600-119093600	Weak transcription	HMEC	breast
12	chr6:119090600-119097400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:119090600-119097400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr6:119090600-119097600	Weak transcription	Primary T cells from cord blood	blood
15	chr6:119090600-119098000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr6:119090800-119092800	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr6:119091000-119098000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:119091200-119091600	Enhancers	Muscle Satellite Cultured Cells	--
19	chr6:119091200-119092000	Enhancers	Primary B cells from cord blood	blood
20	chr6:119091200-119092400	Enhancers	Fetal Thymus	thymus
21	chr6:119091400-119091600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr6:119091400-119091600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:119091400-119091600	Enhancers	Pancreatic Islets	Pancreatic Islet
24	chr6:119091400-119091600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
25	chr6:119091400-119091800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr6:119091400-119092200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr6:119091400-119092200	Enhancers	Stomach Mucosa	stomach
28	chr6:119091400-119092200	Enhancers	Osteobl	bone
29	chr6:119091400-119092600	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links