Variant report

Variant	rs9374758
Chromosome Location	chr6:119246318-119246319
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119242613..119249110-chr6:119251513..119257145,6	MCF-7	breast:
2	chr6:119235128..119240237-chr6:119246100..119252076,6	K562	blood:

Variant related genes	Relation type
ENSG00000111877	Chromatin interaction
ENSG00000253194	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1087451	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1087452	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12529321	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13209700	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13214708	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1321837	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13219598	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1407204	1.00[CHB][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17827619	0.91[ASN][1000 genomes]
rs2145568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs284921	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34455711	0.91[ASN][1000 genomes]
rs35375291	0.88[EUR][1000 genomes]
rs35795136	0.85[ASN][1000 genomes]
rs3822955	0.91[ASN][1000 genomes]
rs4245501	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4946368	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs65685	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6915609	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6915914	1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs706972	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs71559845	0.85[ASN][1000 genomes]
rs7743694	1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7746114	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7766260	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs794602	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs794609	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs794610	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs794612	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs794613	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs794615	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs927288	0.85[ASN][1000 genomes]
rs9372516	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374745	1.00[JPT][hapmap]
rs9374750	1.00[JPT][hapmap]
rs9385056	1.00[JPT][hapmap]
rs9385064	1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9401108	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119218600-119247000	Strong transcription	Fetal Thymus	thymus
2	chr6:119219200-119254000	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr6:119219200-119254400	Strong transcription	Placenta	Placenta
4	chr6:119219600-119253000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:119219600-119253800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:119221200-119255800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:119221400-119246800	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr6:119221600-119247800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr6:119222000-119254000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:119222000-119254400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:119222000-119255200	Weak transcription	Fetal Heart	heart
12	chr6:119222200-119253400	Strong transcription	Fetal Intestine Large	intestine
13	chr6:119222400-119246600	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr6:119222400-119249600	Strong transcription	Primary B cells from peripheral blood	blood
15	chr6:119222600-119251400	Strong transcription	Dnd41	blood
16	chr6:119222600-119253800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:119222600-119253800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:119224000-119254000	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr6:119224200-119252800	Strong transcription	Primary neutrophils fromperipheralblood	blood
20	chr6:119224600-119254000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr6:119224800-119254800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr6:119226000-119255200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr6:119227000-119254800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:119227400-119252000	Weak transcription	Small Intestine	intestine
25	chr6:119227400-119253800	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr6:119227600-119247400	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr6:119227800-119254800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr6:119228000-119253000	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr6:119228200-119253400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr6:119232800-119246800	Strong transcription	Fetal Muscle Leg	muscle
31	chr6:119233200-119247000	Strong transcription	Fetal Muscle Trunk	muscle
32	chr6:119235600-119255200	Weak transcription	Fetal Brain Male	brain
33	chr6:119235600-119255400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr6:119236000-119249000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr6:119236000-119253400	Strong transcription	Liver	Liver
36	chr6:119236600-119254000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr6:119236600-119255200	Weak transcription	Right Ventricle	heart
38	chr6:119237000-119255200	Weak transcription	Brain Germinal Matrix	brain
39	chr6:119237000-119255200	Weak transcription	Gastric	stomach
40	chr6:119237200-119255200	Weak transcription	Brain Angular Gyrus	brain
41	chr6:119238000-119250600	Strong transcription	Adipose Nuclei	Adipose
42	chr6:119238200-119247000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr6:119238200-119247600	Strong transcription	Primary T cells from cord blood	blood
44	chr6:119238800-119247000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr6:119239600-119253800	Strong transcription	Primary B cells from cord blood	blood
46	chr6:119239800-119255200	Weak transcription	NHLF	lung
47	chr6:119240000-119255200	Weak transcription	Fetal Brain Female	brain
48	chr6:119240200-119247600	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr6:119240400-119248200	Strong transcription	HSMM	muscle
50	chr6:119240400-119252800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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