Variant report

Variant	rs6915914
Chromosome Location	chr6:119297385-119297386
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1087451	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1087452	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12529321	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13209700	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13214708	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1321837	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13219598	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1407204	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17827619	0.81[ASN][1000 genomes]
rs2145568	1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs284921	1.00[CHB][hapmap]
rs34455711	0.86[ASN][1000 genomes]
rs35375291	0.86[EUR][1000 genomes]
rs35795136	0.92[ASN][1000 genomes]
rs3822955	0.86[ASN][1000 genomes]
rs4245501	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4946368	0.82[EUR][1000 genomes]
rs61108921	1.00[ASN][1000 genomes]
rs65685	1.00[CHB][hapmap]
rs6915609	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6929592	1.00[JPT][hapmap]
rs6934262	0.82[JPT][hapmap]
rs706972	1.00[CHB][hapmap]
rs71559845	0.92[ASN][1000 genomes]
rs7743694	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7746114	1.00[CHB][hapmap]
rs7766260	1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs794602	0.93[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.93[MEX][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs794609	0.93[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs794610	0.93[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs794612	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs794613	0.93[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs794615	0.92[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs927288	0.92[ASN][1000 genomes]
rs9372516	0.82[EUR][1000 genomes]
rs9374758	1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs9385064	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9401108	0.93[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[MEX][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6915914	ROS1	cis	parietal	SCAN

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119279600-119298200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr6:119279800-119303600	Weak transcription	Adipose Nuclei	Adipose
3	chr6:119280000-119305200	Weak transcription	Primary T cells from cord blood	blood
4	chr6:119281600-119298000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:119281600-119298000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:119281600-119299400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr6:119281600-119303200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:119283600-119302400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:119285200-119304400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr6:119285800-119340000	Weak transcription	Fetal Brain Male	brain
11	chr6:119286000-119300000	Weak transcription	Brain Anterior Caudate	brain
12	chr6:119286000-119302800	Weak transcription	Brain Angular Gyrus	brain
13	chr6:119286800-119298200	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr6:119287200-119299400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:119287200-119305000	Weak transcription	HepG2	liver
16	chr6:119287200-119326600	Weak transcription	Fetal Brain Female	brain
17	chr6:119287400-119330000	Weak transcription	Fetal Muscle Leg	muscle
18	chr6:119287600-119300200	Weak transcription	Placenta	Placenta
19	chr6:119288800-119299000	Weak transcription	Fetal Intestine Small	intestine
20	chr6:119288800-119315000	Weak transcription	Fetal Intestine Large	intestine
21	chr6:119289200-119304600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr6:119292000-119298400	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr6:119292400-119344000	Weak transcription	Brain Germinal Matrix	brain
24	chr6:119292800-119308600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:119293200-119345400	Weak transcription	Lung	lung
26	chr6:119293400-119306800	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr6:119293600-119299400	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr6:119293800-119299400	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr6:119294200-119330800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr6:119295600-119307200	Weak transcription	Brain Hippocampus Middle	brain
31	chr6:119296200-119302200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr6:119296400-119299200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr6:119296400-119299200	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr6:119296400-119302400	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr6:119296800-119299600	Weak transcription	K562	blood
36	chr6:119296800-119314600	Weak transcription	Stomach Smooth Muscle	stomach

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