Variant report

Variant	rs13209700
Chromosome Location	chr6:119303061-119303062
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1087451	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1087452	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12529321	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13214708	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1321837	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13219598	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1407204	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17827619	0.88[ASN][1000 genomes]
rs2145568	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34455711	0.94[ASN][1000 genomes]
rs35375291	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35795136	1.00[ASN][1000 genomes]
rs3822955	0.94[ASN][1000 genomes]
rs4245501	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4946368	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61108921	0.92[ASN][1000 genomes]
rs6915609	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6915914	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71559845	1.00[ASN][1000 genomes]
rs7743694	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7746114	0.85[ASN][1000 genomes]
rs7766260	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs794602	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs794609	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs794610	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs794612	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs794613	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs794615	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs927288	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9372516	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9374758	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9385064	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119279800-119303600	Weak transcription	Adipose Nuclei	Adipose
2	chr6:119280000-119305200	Weak transcription	Primary T cells from cord blood	blood
3	chr6:119281600-119303200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:119285200-119304400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:119285800-119340000	Weak transcription	Fetal Brain Male	brain
6	chr6:119287200-119305000	Weak transcription	HepG2	liver
7	chr6:119287200-119326600	Weak transcription	Fetal Brain Female	brain
8	chr6:119287400-119330000	Weak transcription	Fetal Muscle Leg	muscle
9	chr6:119288800-119315000	Weak transcription	Fetal Intestine Large	intestine
10	chr6:119289200-119304600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:119292400-119344000	Weak transcription	Brain Germinal Matrix	brain
12	chr6:119292800-119308600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:119293200-119345400	Weak transcription	Lung	lung
14	chr6:119293400-119306800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr6:119294200-119330800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr6:119295600-119307200	Weak transcription	Brain Hippocampus Middle	brain
17	chr6:119296800-119314600	Weak transcription	Stomach Smooth Muscle	stomach
18	chr6:119297400-119304400	Weak transcription	Pancreas	Pancrea
19	chr6:119299600-119314600	Weak transcription	Fetal Intestine Small	intestine
20	chr6:119300600-119344000	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr6:119300800-119303200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr6:119300800-119319600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr6:119300800-119342600	Weak transcription	Brain Anterior Caudate	brain
24	chr6:119301000-119321800	Weak transcription	Placenta	Placenta
25	chr6:119301400-119308000	Weak transcription	Fetal Muscle Trunk	muscle
26	chr6:119301400-119313200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:119301400-119319200	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr6:119302200-119313400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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