Variant report

Variant	rs794612
Chromosome Location	chr6:119277489-119277490
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119276132..119278287-chr6:119280565..119283186,2	MCF-7	breast:
2	chr6:119214619..119216603-chr6:119276570..119279269,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111877	Chromatin interaction
ENSG00000111875	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1087451	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1087452	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12529321	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13209700	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13214708	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1321837	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13219598	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1407204	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17827619	0.86[ASN][1000 genomes]
rs2145568	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34455711	0.92[ASN][1000 genomes]
rs35375291	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35795136	0.86[ASN][1000 genomes]
rs3822955	0.92[ASN][1000 genomes]
rs4245501	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4946368	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61108921	0.94[ASN][1000 genomes]
rs6915609	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6915914	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71559845	0.86[ASN][1000 genomes]
rs7743694	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7746114	0.83[ASN][1000 genomes]
rs7766260	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs794602	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs794609	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs794610	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs794613	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs794615	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs927288	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9372516	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9374758	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9385064	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119272000-119281000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:119273400-119277600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:119275200-119286800	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:119277000-119288400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:119277400-119281200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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