Variant report

Variant	rs927288
Chromosome Location	chr6:119293434-119293435
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1087451	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1087452	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12529321	0.94[ASN][1000 genomes]
rs13209700	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13214708	1.00[ASN][1000 genomes]
rs1321837	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13219598	0.94[ASN][1000 genomes]
rs1407204	0.85[CEU][hapmap];1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs17827619	0.88[ASN][1000 genomes]
rs2145568	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs284921	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34455711	0.94[ASN][1000 genomes]
rs35795136	1.00[ASN][1000 genomes]
rs3822955	0.94[ASN][1000 genomes]
rs4245501	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4946368	0.85[ASN][1000 genomes]
rs61108921	0.92[ASN][1000 genomes]
rs65685	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6915609	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6915914	0.83[CEU][hapmap];1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs706972	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs71559845	1.00[ASN][1000 genomes]
rs7743694	0.83[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7746114	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7766260	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs794602	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs794609	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs794610	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs794612	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs794613	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs794615	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9372516	0.85[ASN][1000 genomes]
rs9374745	1.00[JPT][hapmap]
rs9374750	1.00[JPT][hapmap]
rs9374758	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9385056	1.00[JPT][hapmap]
rs9385064	0.83[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9401108	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119279600-119298200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr6:119279800-119303600	Weak transcription	Adipose Nuclei	Adipose
3	chr6:119280000-119305200	Weak transcription	Primary T cells from cord blood	blood
4	chr6:119281600-119298000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:119281600-119298000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:119281600-119299400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr6:119281600-119303200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:119283600-119302400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:119285200-119304400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr6:119285800-119340000	Weak transcription	Fetal Brain Male	brain
11	chr6:119286000-119300000	Weak transcription	Brain Anterior Caudate	brain
12	chr6:119286000-119302800	Weak transcription	Brain Angular Gyrus	brain
13	chr6:119286800-119298200	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr6:119287200-119299400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:119287200-119305000	Weak transcription	HepG2	liver
16	chr6:119287200-119326600	Weak transcription	Fetal Brain Female	brain
17	chr6:119287400-119330000	Weak transcription	Fetal Muscle Leg	muscle
18	chr6:119287600-119300200	Weak transcription	Placenta	Placenta
19	chr6:119287800-119296200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr6:119288800-119299000	Weak transcription	Fetal Intestine Small	intestine
21	chr6:119288800-119315000	Weak transcription	Fetal Intestine Large	intestine
22	chr6:119289200-119304600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:119292000-119298400	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr6:119292200-119294000	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr6:119292400-119344000	Weak transcription	Brain Germinal Matrix	brain
26	chr6:119292800-119308600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:119293000-119293600	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr6:119293200-119294200	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr6:119293200-119345400	Weak transcription	Lung	lung
30	chr6:119293400-119306800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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