Variant report

Variant	rs794602
Chromosome Location	chr6:119287609-119287610
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119287587..119289339-chr6:119398446..119400004,2	K562	blood:

Variant related genes	Relation type
ENSG00000111879	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1087451	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1087452	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12529321	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13209700	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13214708	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1321837	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13219598	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1407204	0.93[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17827619	0.94[ASN][1000 genomes]
rs2145568	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs284921	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34455711	1.00[ASN][1000 genomes]
rs35375291	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35795136	0.94[ASN][1000 genomes]
rs3822955	1.00[ASN][1000 genomes]
rs4245501	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4946368	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61108921	0.86[ASN][1000 genomes]
rs65685	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6915609	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6915914	0.93[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.93[MEX][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs706972	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs71559845	0.94[ASN][1000 genomes]
rs7743694	0.93[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];0.93[MEX][hapmap];0.84[TSI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7746114	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7766260	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs794609	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs794610	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs794612	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs794613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs794615	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs927288	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9372516	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9374745	1.00[JPT][hapmap]
rs9374750	1.00[JPT][hapmap]
rs9374758	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9385056	1.00[JPT][hapmap]
rs9385064	0.91[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.93[MEX][hapmap];0.84[TSI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9401108	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs794602	ROS1	cis	parietal	SCAN

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119277000-119288400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:119279600-119298200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:119279800-119303600	Weak transcription	Adipose Nuclei	Adipose
4	chr6:119280000-119305200	Weak transcription	Primary T cells from cord blood	blood
5	chr6:119280400-119293000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:119281400-119293200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr6:119281600-119298000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr6:119281600-119298000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:119281600-119299400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr6:119281600-119303200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:119283600-119302400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr6:119285200-119304400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr6:119285800-119340000	Weak transcription	Fetal Brain Male	brain
14	chr6:119286000-119288800	Enhancers	Fetal Intestine Large	intestine
15	chr6:119286000-119293000	Weak transcription	Lung	lung
16	chr6:119286000-119300000	Weak transcription	Brain Anterior Caudate	brain
17	chr6:119286000-119302800	Weak transcription	Brain Angular Gyrus	brain
18	chr6:119286200-119288800	Enhancers	Fetal Intestine Small	intestine
19	chr6:119286600-119287800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr6:119286600-119287800	Enhancers	Stomach Mucosa	stomach
21	chr6:119286800-119298200	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr6:119287000-119288400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:119287200-119299400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr6:119287200-119305000	Weak transcription	HepG2	liver
25	chr6:119287200-119326600	Weak transcription	Fetal Brain Female	brain
26	chr6:119287400-119330000	Weak transcription	Fetal Muscle Leg	muscle
27	chr6:119287600-119300200	Weak transcription	Placenta	Placenta

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