Variant report

Variant	rs17696650
Chromosome Location	chr8:51198904-51198905
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10504107	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1481469	0.85[EUR][1000 genomes]
rs17698418	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17771833	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2392626	0.85[EUR][1000 genomes]
rs4416833	0.85[EUR][1000 genomes]
rs6473120	0.85[EUR][1000 genomes]
rs6985128	0.85[EUR][1000 genomes]
rs6995929	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7815212	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv470212	chr8:51176635-51227506	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51198600-51200600	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr8:51198800-51199200	Enhancers	H9 Cell Line	embryonic stem cell
3	chr8:51198800-51199400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr8:51198800-51200000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr8:51198800-51200200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr8:51198800-51200400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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