Variant report

Variant	rs17697126
Chromosome Location	chr5:127354520-127354521
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10519973	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10519974	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1368270	0.88[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1432614	0.85[CHB][hapmap]
rs1432615	0.84[CHB][hapmap]
rs17164427	0.84[CHB][hapmap]
rs17697290	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17764718	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3805604	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs3805616	0.86[JPT][hapmap]
rs4835938	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4835939	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4835942	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4836362	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4836365	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs55763377	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58395264	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58597384	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62373688	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62373689	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62373694	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6862701	0.85[CHB][hapmap]
rs6867078	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6873339	0.85[CHB][hapmap]
rs73337306	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7379655	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9800302	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1813981	chr5:127327649-127437401	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	esv1806594	chr5:127336033-127410767	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv1808488	chr5:127336033-127410767	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv1825228	chr5:127336033-127410767	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv1829119	chr5:127336033-127410767	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127297800-127358400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr5:127324400-127354800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:127324400-127358400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:127326400-127359400	Weak transcription	GM12878-XiMat	blood
5	chr5:127327800-127359400	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr5:127328200-127379800	Weak transcription	Esophagus	oesophagus
7	chr5:127332400-127388800	Weak transcription	Aorta	Aorta
8	chr5:127333600-127358200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr5:127333600-127358400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:127333600-127388800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr5:127333600-127417800	Weak transcription	Pancreas	Pancrea
12	chr5:127333800-127370800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr5:127334600-127394000	Weak transcription	Lung	lung
14	chr5:127335000-127355800	Weak transcription	Primary T cells from cord blood	blood
15	chr5:127335000-127397600	Weak transcription	NHDF-Ad	bronchial
16	chr5:127336800-127375000	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr5:127338400-127355800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr5:127338600-127358400	Weak transcription	HMEC	breast
19	chr5:127338600-127359400	Weak transcription	Ovary	ovary
20	chr5:127339000-127354600	Weak transcription	Primary B cells from cord blood	blood
21	chr5:127341800-127356000	Weak transcription	Psoas Muscle	Psoas
22	chr5:127342000-127358600	Weak transcription	Fetal Muscle Leg	muscle
23	chr5:127343000-127380000	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr5:127343800-127361600	Weak transcription	Adipose Nuclei	Adipose
25	chr5:127345400-127355800	Weak transcription	Gastric	stomach
26	chr5:127345400-127357600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr5:127345600-127371400	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr5:127347000-127358400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr5:127347400-127362200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr5:127347800-127365800	Weak transcription	Duodenum Mucosa	Duodenum
31	chr5:127349400-127357600	Weak transcription	Osteobl	bone
32	chr5:127350400-127358400	Weak transcription	HSMM	muscle
33	chr5:127350600-127357000	Weak transcription	Brain Hippocampus Middle	brain
34	chr5:127350600-127357800	Weak transcription	Spleen	Spleen
35	chr5:127350600-127358000	Weak transcription	Brain Substantia Nigra	brain
36	chr5:127350600-127362600	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr5:127350800-127356400	Weak transcription	Stomach Mucosa	stomach
38	chr5:127351000-127372800	Weak transcription	Brain Angular Gyrus	brain
39	chr5:127351800-127355800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr5:127352000-127354600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr5:127352000-127360200	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr5:127352000-127372800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr5:127352200-127357800	Weak transcription	A549	lung
44	chr5:127352200-127366400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr5:127352400-127356600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr5:127352600-127361400	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr5:127352800-127358400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr5:127353000-127362200	Weak transcription	Fetal Lung	lung
49	chr5:127353000-127365600	Weak transcription	Dnd41	blood
50	chr5:127353200-127397000	Weak transcription	Rectal Mucosa Donor 31	rectum

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