Variant report

Variant	rs1368270
Chromosome Location	chr5:127461690-127461691
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:127417854..127421061-chr5:127460811..127464558,5	K562	blood:
2	chr5:127457791..127460018-chr5:127460222..127462434,2	K562	blood:
3	chr5:127417433..127421061-chr5:127459606..127464558,4	K562	blood:

Variant related genes	Relation type
ENSG00000064651	Chromatin interaction
ENSG00000245937	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10060390	0.89[CHB][hapmap]
rs10061367	0.89[CHB][hapmap]
rs10478798	0.89[CHB][hapmap]
rs10478803	0.83[CHB][hapmap]
rs10519973	0.94[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10519974	0.94[CHB][hapmap];0.95[JPT][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13355233	0.89[CHB][hapmap]
rs13357268	0.89[CHB][hapmap]
rs1432614	0.84[CHB][hapmap]
rs1432615	0.84[CHB][hapmap]
rs1559263	0.83[CHB][hapmap]
rs1560636	0.89[CHB][hapmap]
rs17164310	0.83[CHB][hapmap]
rs17164427	0.84[CHB][hapmap]
rs17697126	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17697290	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17764718	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17764954	0.83[CHB][hapmap]
rs1842006	0.81[CHB][hapmap]
rs1864922	0.83[CHB][hapmap]
rs1864923	0.89[CHB][hapmap]
rs1962291	0.89[CHB][hapmap]
rs2054444	0.83[CHB][hapmap]
rs2898096	0.89[CHB][hapmap]
rs3792866	0.89[CHB][hapmap]
rs3805604	0.94[CHB][hapmap];0.95[JPT][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3805606	0.89[CHB][hapmap]
rs3805607	0.83[CHB][hapmap]
rs3805612	0.83[CHB][hapmap]
rs3805616	0.83[CHB][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3816006	0.89[CHB][hapmap]
rs4835938	0.90[ASN][1000 genomes]
rs4835939	0.89[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs4835941	0.89[CHB][hapmap]
rs4835942	0.94[CHB][hapmap];0.95[JPT][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4835943	0.89[CHB][hapmap]
rs4835944	0.83[CHB][hapmap]
rs4836360	0.89[CHB][hapmap]
rs4836361	0.89[CHB][hapmap]
rs4836362	0.94[CHB][hapmap];0.95[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4836365	0.94[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4836366	0.89[CHB][hapmap]
rs4836367	0.89[CHB][hapmap]
rs55763377	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57404079	0.81[AFR][1000 genomes]
rs58395264	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs58597384	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58603816	0.84[AFR][1000 genomes]
rs62373688	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs62373689	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs62373694	0.90[ASN][1000 genomes]
rs6862701	0.84[CHB][hapmap]
rs6867078	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6873339	0.84[CHB][hapmap]
rs6887847	0.88[CHB][hapmap]
rs73337306	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73784521	0.84[AFR][1000 genomes]
rs7379655	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7703634	0.88[CHB][hapmap]
rs7713860	0.89[CHB][hapmap]
rs7718286	0.89[CHB][hapmap]
rs883074	0.89[CHB][hapmap]
rs9800302	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127421600-127466800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:127423600-127494000	Weak transcription	K562	blood
3	chr5:127441200-127536800	Weak transcription	Colonic Mucosa	Colon
4	chr5:127442400-127525000	Weak transcription	Right Ventricle	heart
5	chr5:127443000-127467000	Weak transcription	Esophagus	oesophagus
6	chr5:127445200-127466800	Weak transcription	Gastric	stomach
7	chr5:127445200-127480200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr5:127445400-127491800	Weak transcription	Psoas Muscle	Psoas
9	chr5:127447000-127525000	Weak transcription	Fetal Brain Male	brain
10	chr5:127447800-127466600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr5:127451000-127466800	Weak transcription	Thymus	Thymus
12	chr5:127451200-127465800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr5:127451200-127465800	Weak transcription	Fetal Intestine Small	intestine
14	chr5:127451400-127490600	Weak transcription	Aorta	Aorta
15	chr5:127451600-127488200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr5:127451800-127466800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr5:127451800-127471800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr5:127451800-127488600	Weak transcription	Osteobl	bone
19	chr5:127451800-127490400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr5:127452000-127465800	Weak transcription	Fetal Stomach	stomach
21	chr5:127452000-127466800	Weak transcription	Stomach Smooth Muscle	stomach
22	chr5:127452000-127467000	Weak transcription	Lung	lung
23	chr5:127452000-127473200	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr5:127452000-127477200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr5:127452000-127477600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr5:127452000-127490400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr5:127452600-127472400	Weak transcription	Rectal Smooth Muscle	rectum
28	chr5:127453000-127463600	Weak transcription	HUVEC	blood vessel
29	chr5:127453000-127473800	Weak transcription	Colon Smooth Muscle	Colon
30	chr5:127453200-127473000	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr5:127453600-127493800	Weak transcription	Liver	Liver
32	chr5:127453600-127525400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr5:127454200-127461800	Weak transcription	Brain Substantia Nigra	brain
34	chr5:127454200-127466800	Weak transcription	Fetal Thymus	thymus
35	chr5:127454200-127467400	Weak transcription	Brain Anterior Caudate	brain
36	chr5:127454200-127469600	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr5:127454200-127477400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr5:127454400-127466800	Weak transcription	Brain Angular Gyrus	brain
39	chr5:127454400-127470600	Weak transcription	Adipose Nuclei	Adipose
40	chr5:127454400-127493800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr5:127454600-127470000	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr5:127454800-127466600	Weak transcription	Fetal Lung	lung
43	chr5:127454800-127466800	Weak transcription	Brain Germinal Matrix	brain
44	chr5:127454800-127467400	Weak transcription	Primary T cells from cord blood	blood
45	chr5:127454800-127469800	Weak transcription	HSMM	muscle
46	chr5:127454800-127477600	Weak transcription	Small Intestine	intestine
47	chr5:127455000-127465800	Weak transcription	Fetal Intestine Large	intestine
48	chr5:127455000-127466400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr5:127455000-127466600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr5:127455000-127466600	Weak transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links