Variant report

Variant	rs883074
Chromosome Location	chr5:127445823-127445824
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:127417788..127421083-chr5:127443681..127446699,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC27A6-2	chr5:127445178-127446686	NONHSAT103657

Variant related genes	Relation type
ENSG00000064651	Chromatin interaction
ENSG00000245937	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10060390	0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs10061367	0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs10089	0.90[CEU][hapmap];0.86[JPT][hapmap]
rs10463838	0.90[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap]
rs10478798	0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs10478803	0.90[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.95[YRI][hapmap]
rs10519973	0.84[CHB][hapmap]
rs10519974	0.84[CHB][hapmap]
rs13355233	0.90[CEU][hapmap];1.00[CHB][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap]
rs13357268	0.94[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.95[YRI][hapmap]
rs1368270	0.89[CHB][hapmap]
rs1432614	0.85[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs1432615	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap]
rs1559263	0.90[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap]
rs1560636	0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs17164310	0.90[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap]
rs17164427	0.88[ASW][hapmap];0.85[CEU][hapmap];0.95[CHB][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];1.00[MKK][hapmap]
rs17764954	0.90[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap]
rs1842006	0.89[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap]
rs1864922	1.00[ASW][hapmap];0.90[CEU][hapmap];0.95[CHB][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs1864923	0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs1962291	0.90[CEU][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap]
rs2054444	0.90[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap]
rs2898096	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs3087889	0.90[CEU][hapmap];0.86[JPT][hapmap]
rs3792866	1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs3805604	0.84[CHB][hapmap]
rs3805606	1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs3805607	0.90[CEU][hapmap];0.95[CHB][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap]
rs3805612	0.90[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap]
rs3805615	0.90[CEU][hapmap];0.90[JPT][hapmap]
rs3816006	0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs4835941	0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs4835942	0.84[CHB][hapmap]
rs4835943	0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4835944	0.90[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap]
rs4836360	0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4836361	0.90[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap]
rs4836362	0.84[CHB][hapmap]
rs4836365	0.84[CHB][hapmap]
rs4836366	0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4836367	0.90[CEU][hapmap];1.00[CHB][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap]
rs6595806	0.90[CEU][hapmap]
rs6862701	0.84[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.90[YRI][hapmap]
rs6873339	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs6887847	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7703634	0.90[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap]
rs7713860	0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap]
rs7718286	0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs790156	0.85[LWK][hapmap];0.95[YRI][hapmap]
rs806100	0.82[LWK][hapmap];0.95[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1825644	chr5:127427533-127450581	Weak transcription Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127421400-127450200	Weak transcription	Fetal Thymus	thymus
2	chr5:127421600-127466800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr5:127423600-127494000	Weak transcription	K562	blood
4	chr5:127432400-127454600	Weak transcription	Fetal Kidney	kidney
5	chr5:127434400-127449000	Weak transcription	Dnd41	blood
6	chr5:127434800-127450600	Weak transcription	Fetal Intestine Small	intestine
7	chr5:127435000-127447600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr5:127435000-127447600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:127435000-127448600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:127435000-127448600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr5:127435000-127449600	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr5:127435200-127450400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr5:127435200-127450800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:127435600-127449400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr5:127437000-127449800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr5:127437200-127449800	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr5:127437400-127446000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr5:127437600-127447600	Weak transcription	Brain Anterior Caudate	brain
19	chr5:127437600-127447600	Weak transcription	NH-A	brain
20	chr5:127437800-127451600	Weak transcription	HMEC	breast
21	chr5:127438000-127450600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr5:127438400-127450200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr5:127439400-127447600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr5:127439400-127450400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr5:127441200-127450600	Weak transcription	Aorta	Aorta
26	chr5:127441200-127536800	Weak transcription	Colonic Mucosa	Colon
27	chr5:127441400-127449600	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr5:127441400-127450600	Weak transcription	Ovary	ovary
29	chr5:127441400-127450600	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr5:127441400-127457400	Weak transcription	Stomach Mucosa	stomach
31	chr5:127441600-127450600	Weak transcription	Brain Hippocampus Middle	brain
32	chr5:127441600-127450600	Weak transcription	Stomach Smooth Muscle	stomach
33	chr5:127441800-127448400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr5:127441800-127450600	Weak transcription	Rectal Smooth Muscle	rectum
35	chr5:127441800-127451000	Weak transcription	Colon Smooth Muscle	Colon
36	chr5:127442000-127449600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr5:127442400-127525000	Weak transcription	Right Ventricle	heart
38	chr5:127442800-127448800	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr5:127443000-127457200	Weak transcription	Pancreas	Pancrea
40	chr5:127443000-127467000	Weak transcription	Esophagus	oesophagus
41	chr5:127443600-127450200	Weak transcription	Adipose Nuclei	Adipose
42	chr5:127443600-127450600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr5:127443800-127459800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr5:127444000-127446800	Strong transcription	Fetal Intestine Large	intestine
45	chr5:127444200-127449400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr5:127444400-127449000	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr5:127444400-127449800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr5:127444400-127457600	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr5:127444600-127449000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr5:127444800-127446200	Strong transcription	Fetal Stomach	stomach

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