Variant report

Variant	rs4835943
Chromosome Location	chr5:127457569-127457570
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:127418352..127421092-chr5:127457384..127460023,3	MCF-7	breast:
2	chr5:127419680..127422098-chr5:127455082..127457823,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000064651	Chromatin interaction
ENSG00000245937	Chromatin interaction

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10039525	0.82[AFR][1000 genomes]
rs10045113	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10045307	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10057122	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10059867	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10060181	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10060390	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10061367	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10064098	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10064357	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10089	1.00[CEU][hapmap];0.91[JPT][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1012851	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10223203	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10223313	0.81[AMR][1000 genomes]
rs1036171	0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10463838	1.00[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10463839	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10478796	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10478798	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10478803	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10519973	0.84[CHB][hapmap]
rs10519974	0.84[CHB][hapmap]
rs11957052	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13355233	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13356473	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13357268	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13358455	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1368270	0.89[CHB][hapmap]
rs1432614	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1432615	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1559263	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1560636	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17164310	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17164427	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17764954	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1842006	1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1864922	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1864923	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1962291	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1985268	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2016015	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2054444	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2190797	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2228112	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2409109	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2898096	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3087889	1.00[CEU][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3792866	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3805604	0.84[CHB][hapmap]
rs3805606	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3805607	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3805612	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3805615	1.00[CEU][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3816006	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4835940	0.94[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4835941	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4835942	0.84[CHB][hapmap]
rs4835944	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4835945	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4836358	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4836359	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4836360	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4836361	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4836362	0.84[CHB][hapmap]
rs4836363	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4836365	0.84[CHB][hapmap]
rs4836366	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4836367	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4836368	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4836369	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4836370	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56066100	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58433932	0.89[AMR][1000 genomes]
rs59484271	0.86[EUR][1000 genomes]
rs60964984	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs62373701	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6595798	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6595800	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6595806	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6595807	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6862701	0.95[CEU][hapmap];0.95[CHB][hapmap];0.96[JPT][hapmap];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6873339	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6875982	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6879970	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6887674	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6887847	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72794392	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72794396	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72794400	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72794401	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs736969	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7703634	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7713860	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7718286	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7732599	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs883074	0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs891886	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9968597	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127421600-127466800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:127423600-127494000	Weak transcription	K562	blood
3	chr5:127441200-127536800	Weak transcription	Colonic Mucosa	Colon
4	chr5:127442400-127525000	Weak transcription	Right Ventricle	heart
5	chr5:127443000-127467000	Weak transcription	Esophagus	oesophagus
6	chr5:127443800-127459800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr5:127444400-127457600	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr5:127445200-127466800	Weak transcription	Gastric	stomach
9	chr5:127445200-127480200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr5:127445400-127491800	Weak transcription	Psoas Muscle	Psoas
11	chr5:127447000-127525000	Weak transcription	Fetal Brain Male	brain
12	chr5:127447800-127466600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr5:127448400-127458600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr5:127451000-127466800	Weak transcription	Thymus	Thymus
15	chr5:127451200-127465800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr5:127451200-127465800	Weak transcription	Fetal Intestine Small	intestine
17	chr5:127451400-127490600	Weak transcription	Aorta	Aorta
18	chr5:127451600-127488200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr5:127451800-127466800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr5:127451800-127471800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr5:127451800-127488600	Weak transcription	Osteobl	bone
22	chr5:127451800-127490400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr5:127452000-127465800	Weak transcription	Fetal Stomach	stomach
24	chr5:127452000-127466800	Weak transcription	Stomach Smooth Muscle	stomach
25	chr5:127452000-127467000	Weak transcription	Lung	lung
26	chr5:127452000-127473200	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr5:127452000-127477200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr5:127452000-127477600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr5:127452000-127490400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr5:127452200-127457600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr5:127452600-127459600	Weak transcription	Ovary	ovary
32	chr5:127452600-127472400	Weak transcription	Rectal Smooth Muscle	rectum
33	chr5:127453000-127459800	Weak transcription	HSMMtube	muscle
34	chr5:127453000-127463600	Weak transcription	HUVEC	blood vessel
35	chr5:127453000-127473800	Weak transcription	Colon Smooth Muscle	Colon
36	chr5:127453200-127473000	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr5:127453600-127493800	Weak transcription	Liver	Liver
38	chr5:127453600-127525400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr5:127454200-127461800	Weak transcription	Brain Substantia Nigra	brain
40	chr5:127454200-127466800	Weak transcription	Fetal Thymus	thymus
41	chr5:127454200-127467400	Weak transcription	Brain Anterior Caudate	brain
42	chr5:127454200-127469600	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr5:127454200-127477400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr5:127454400-127466800	Weak transcription	Brain Angular Gyrus	brain
45	chr5:127454400-127470600	Weak transcription	Adipose Nuclei	Adipose
46	chr5:127454400-127493800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr5:127454600-127470000	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr5:127454800-127466600	Weak transcription	Fetal Lung	lung
49	chr5:127454800-127466800	Weak transcription	Brain Germinal Matrix	brain
50	chr5:127454800-127467400	Weak transcription	Primary T cells from cord blood	blood

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