Variant report

Variant	rs10059867
Chromosome Location	chr5:127515952-127515953
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:127496681..127498566-chr5:127515204..127518198,2	K562	blood:

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10045113	0.81[ASN][1000 genomes]
rs10057122	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10060181	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10060390	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10061367	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10064357	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10089	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10223203	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10223313	0.93[ASN][1000 genomes]
rs1036171	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10463838	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10463839	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10478796	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10478798	0.81[ASN][1000 genomes]
rs10478803	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11957052	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13355233	0.83[ASN][1000 genomes]
rs13356473	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13357268	0.83[ASN][1000 genomes]
rs1432614	0.81[AMR][1000 genomes]
rs1432615	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1559263	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1560636	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17164310	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17764954	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1842006	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1864922	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1864923	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1962291	0.83[ASN][1000 genomes]
rs1985268	0.81[ASN][1000 genomes]
rs2016015	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2054444	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2228112	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2409109	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2898096	0.81[ASN][1000 genomes]
rs3087889	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3792866	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3805606	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3805607	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3805612	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3805615	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3816006	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4835940	0.81[AMR][1000 genomes]
rs4835941	0.83[ASN][1000 genomes]
rs4835943	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4835944	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4835945	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4836358	0.81[ASN][1000 genomes]
rs4836359	0.81[ASN][1000 genomes]
rs4836360	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4836361	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4836363	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4836366	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4836367	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4836368	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4836369	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4836370	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56066100	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59484271	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6595798	0.81[ASN][1000 genomes]
rs6595800	0.81[AMR][1000 genomes]
rs6595806	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6595807	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6862701	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6873339	0.81[ASN][1000 genomes]
rs6875982	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6879970	0.81[ASN][1000 genomes]
rs6887674	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6887847	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72794392	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72794396	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72794400	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72794401	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs736969	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7703634	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7713860	0.82[ASN][1000 genomes]
rs7718286	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs891886	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9968597	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830482	chr5:127475398-127665377	Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127441200-127536800	Weak transcription	Colonic Mucosa	Colon
2	chr5:127442400-127525000	Weak transcription	Right Ventricle	heart
3	chr5:127447000-127525000	Weak transcription	Fetal Brain Male	brain
4	chr5:127453600-127525400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr5:127457600-127534400	Weak transcription	Pancreas	Pancrea
6	chr5:127460800-127525200	Weak transcription	Spleen	Spleen
7	chr5:127463200-127533000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr5:127465400-127532200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr5:127467600-127525000	Weak transcription	Thymus	Thymus
10	chr5:127468000-127536800	Weak transcription	Fetal Brain Female	brain
11	chr5:127469200-127524200	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr5:127473600-127521800	Weak transcription	Fetal Kidney	kidney
13	chr5:127478400-127524600	Weak transcription	Small Intestine	intestine
14	chr5:127478600-127531600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr5:127479200-127532200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr5:127480600-127532400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr5:127480600-127534400	Weak transcription	Gastric	stomach
18	chr5:127485000-127536800	Weak transcription	Colon Smooth Muscle	Colon
19	chr5:127488600-127533200	Weak transcription	Stomach Mucosa	stomach
20	chr5:127488800-127523600	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr5:127490400-127532800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr5:127490600-127520800	Weak transcription	Dnd41	blood
23	chr5:127490800-127529200	Weak transcription	Aorta	Aorta
24	chr5:127490800-127536600	Weak transcription	Brain Cingulate Gyrus	brain
25	chr5:127491000-127518600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr5:127492200-127527200	Weak transcription	NHDF-Ad	bronchial
27	chr5:127493200-127529200	Weak transcription	Psoas Muscle	Psoas
28	chr5:127494400-127516000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr5:127494400-127516200	Weak transcription	Primary hematopoietic stem cells	blood
30	chr5:127494400-127517000	Weak transcription	K562	blood
31	chr5:127494400-127522000	Weak transcription	Brain Substantia Nigra	brain
32	chr5:127494400-127526800	Weak transcription	Fetal Lung	lung
33	chr5:127494400-127534800	Weak transcription	Liver	Liver
34	chr5:127494400-127536800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr5:127494600-127534400	Weak transcription	HUVEC	blood vessel
36	chr5:127495400-127516200	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr5:127496600-127525800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr5:127497800-127520000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr5:127498000-127520800	Weak transcription	Fetal Thymus	thymus
40	chr5:127498400-127518600	Weak transcription	HSMM	muscle
41	chr5:127498400-127532200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr5:127499000-127519800	Weak transcription	NH-A	brain
43	chr5:127499000-127532400	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr5:127499000-127533400	Weak transcription	GM12878-XiMat	blood
45	chr5:127499200-127518800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr5:127499200-127520800	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr5:127499200-127534600	Weak transcription	Lung	lung
48	chr5:127499400-127528400	Weak transcription	Fetal Intestine Small	intestine
49	chr5:127500000-127521800	Weak transcription	Adipose Nuclei	Adipose
50	chr5:127500400-127532400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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