The 2.0 version of rSNPBase

Variant report

Variant rs2228112
Chromosome Location chr5:127469859-127469860
allele A/C/G/T
Outlinks Ensembl   UCSC
Chromatin state (count:102 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:127423600-127494000 Weak transcription K562 blood
2 chr5:127441200-127536800 Weak transcription Colonic Mucosa Colon
3 chr5:127442400-127525000 Weak transcription Right Ventricle heart
4 chr5:127445200-127480200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
5 chr5:127445400-127491800 Weak transcription Psoas Muscle Psoas
6 chr5:127447000-127525000 Weak transcription Fetal Brain Male brain
7 chr5:127451400-127490600 Weak transcription Aorta Aorta
8 chr5:127451600-127488200 Weak transcription iPS-18 Cell Line embryonic stem cell
9 chr5:127451800-127471800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
10 chr5:127451800-127488600 Weak transcription Osteobl bone
11 chr5:127451800-127490400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
12 chr5:127452000-127473200 Weak transcription Skeletal Muscle Male skeletal muscle
13 chr5:127452000-127477200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
14 chr5:127452000-127477600 Weak transcription Primary T helper naive cells fromperipheralblood blood
15 chr5:127452000-127490400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
16 chr5:127452600-127472400 Weak transcription Rectal Smooth Muscle rectum
17 chr5:127453000-127473800 Weak transcription Colon Smooth Muscle Colon
18 chr5:127453200-127473000 Weak transcription Primary T helper cells PMA-I stimulated --
19 chr5:127453600-127493800 Weak transcription Liver Liver
20 chr5:127453600-127525400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
21 chr5:127454200-127477400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
22 chr5:127454400-127470600 Weak transcription Adipose Nuclei Adipose
23 chr5:127454400-127493800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
24 chr5:127454600-127470000 Weak transcription Brain Inferior Temporal Lobe brain
25 chr5:127454800-127477600 Weak transcription Small Intestine intestine
26 chr5:127455000-127470600 Weak transcription Primary hematopoietic stem cells blood
27 chr5:127455000-127470800 Weak transcription Primary B cells from peripheral blood blood
28 chr5:127455000-127470800 Weak transcription Cortex derived primary cultured neurospheres brain
29 chr5:127455000-127471600 Weak transcription NH-A brain
30 chr5:127455000-127472000 Weak transcription Sigmoid Colon Sigmoid Colon
31 chr5:127455000-127472200 Weak transcription Primary T regulatory cells fromperipheralblood blood
32 chr5:127455000-127472200 Weak transcription Fetal Kidney kidney
33 chr5:127455000-127473200 Weak transcription Fetal Muscle Leg muscle
34 chr5:127455000-127477400 Weak transcription HUES64 Cell Line embryonic stem cell
35 chr5:127455200-127470200 Weak transcription Primary T helper cells fromperipheralblood blood
36 chr5:127457600-127534400 Weak transcription Pancreas Pancrea
37 chr5:127457800-127487800 Weak transcription Stomach Mucosa stomach
38 chr5:127457800-127489400 Weak transcription NHEK skin
39 chr5:127458000-127470400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
40 chr5:127458200-127473200 Weak transcription Primary neutrophils fromperipheralblood blood
41 chr5:127460800-127525200 Weak transcription Spleen Spleen
42 chr5:127461000-127472400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
43 chr5:127461200-127488400 Weak transcription HSMMtube muscle
44 chr5:127461600-127480000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
45 chr5:127462400-127471800 Weak transcription Brain Substantia Nigra brain
46 chr5:127463200-127533000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
47 chr5:127464200-127488400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
48 chr5:127464400-127489800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
49 chr5:127464600-127470800 Weak transcription Primary T cells fromperipheralblood blood
50 chr5:127464600-127477600 Weak transcription Muscle Satellite Cultured Cells --

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Last update: Aug 31, 2015