Variant report

Variant	rs10519973
Chromosome Location	chr5:127473130-127473131
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:127468405..127470415-chr5:127471988..127474109,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10060390	0.84[CHB][hapmap]
rs10061367	0.84[CHB][hapmap]
rs10478798	0.84[CHB][hapmap]
rs10519974	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13355233	0.84[CHB][hapmap]
rs13357268	0.84[CHB][hapmap]
rs1368270	0.94[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1560636	0.84[CHB][hapmap]
rs17164310	0.80[MEX][hapmap]
rs17697126	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17697290	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17764718	0.88[ASN][1000 genomes]
rs1864923	0.84[CHB][hapmap]
rs1962291	0.84[CHB][hapmap]
rs2898096	0.84[CHB][hapmap]
rs3792866	0.84[CHB][hapmap]
rs3805604	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3805606	0.84[CHB][hapmap]
rs3805616	0.83[CHB][hapmap];0.85[JPT][hapmap];0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3805635	1.00[ASW][hapmap]
rs3816006	0.84[CHB][hapmap]
rs4835938	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4835939	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4835941	0.84[CHB][hapmap]
rs4835942	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4835943	0.84[CHB][hapmap]
rs4836360	0.84[CHB][hapmap]
rs4836361	0.84[CHB][hapmap]
rs4836362	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4836365	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4836366	0.84[CHB][hapmap]
rs4836367	0.84[CHB][hapmap]
rs55763377	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58395264	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs58597384	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62373688	0.86[ASN][1000 genomes]
rs62373689	0.88[ASN][1000 genomes]
rs62373694	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6867078	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6887847	0.83[CHB][hapmap]
rs73337306	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7379655	0.90[ASN][1000 genomes]
rs7713860	0.84[CHB][hapmap]
rs7718286	0.84[CHB][hapmap]
rs883074	0.84[CHB][hapmap]
rs9800302	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127423600-127494000	Weak transcription	K562	blood
2	chr5:127441200-127536800	Weak transcription	Colonic Mucosa	Colon
3	chr5:127442400-127525000	Weak transcription	Right Ventricle	heart
4	chr5:127445200-127480200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:127445400-127491800	Weak transcription	Psoas Muscle	Psoas
6	chr5:127447000-127525000	Weak transcription	Fetal Brain Male	brain
7	chr5:127451400-127490600	Weak transcription	Aorta	Aorta
8	chr5:127451600-127488200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr5:127451800-127488600	Weak transcription	Osteobl	bone
10	chr5:127451800-127490400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr5:127452000-127473200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr5:127452000-127477200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:127452000-127477600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr5:127452000-127490400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr5:127453000-127473800	Weak transcription	Colon Smooth Muscle	Colon
16	chr5:127453600-127493800	Weak transcription	Liver	Liver
17	chr5:127453600-127525400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr5:127454200-127477400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr5:127454400-127493800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr5:127454800-127477600	Weak transcription	Small Intestine	intestine
21	chr5:127455000-127473200	Weak transcription	Fetal Muscle Leg	muscle
22	chr5:127455000-127477400	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr5:127457600-127534400	Weak transcription	Pancreas	Pancrea
24	chr5:127457800-127487800	Weak transcription	Stomach Mucosa	stomach
25	chr5:127457800-127489400	Weak transcription	NHEK	skin
26	chr5:127458200-127473200	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr5:127460800-127525200	Weak transcription	Spleen	Spleen
28	chr5:127461200-127488400	Weak transcription	HSMMtube	muscle
29	chr5:127461600-127480000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr5:127463200-127533000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr5:127464200-127488400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr5:127464400-127489800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr5:127464600-127477600	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr5:127464800-127497600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr5:127465000-127477200	Weak transcription	HUVEC	blood vessel
36	chr5:127465400-127486800	Weak transcription	GM12878-XiMat	blood
37	chr5:127465400-127532200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr5:127466600-127474600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr5:127466800-127473800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr5:127467000-127489000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr5:127467200-127500600	Weak transcription	Esophagus	oesophagus
42	chr5:127467600-127475800	Weak transcription	Gastric	stomach
43	chr5:127467600-127477600	Weak transcription	Ovary	ovary
44	chr5:127467600-127480200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr5:127467600-127490200	Weak transcription	Lung	lung
46	chr5:127467600-127491200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr5:127467600-127525000	Weak transcription	Thymus	Thymus
48	chr5:127467800-127488800	Weak transcription	Fetal Intestine Small	intestine
49	chr5:127467800-127508000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr5:127468000-127473200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links