Variant report

Variant	rs17705846
Chromosome Location	chr2:188162612-188162613
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:188160492..188162802-chr2:188166384..188168217,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10497680	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs13432953	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1386542	0.82[JPT][hapmap]
rs1398062	0.87[EUR][1000 genomes]
rs1511878	0.84[ASN][1000 genomes]
rs1706287	0.88[CEU][hapmap]
rs17366895	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17576288	1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs17705816	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28866036	0.86[AFR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3771083	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3771088	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3771095	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3815524	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4482438	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58059768	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58601170	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59646699	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67285489	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6729250	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs6753578	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs67937232	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs67965661	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs696574	0.89[CEU][hapmap]
rs698578	1.00[CEU][hapmap]
rs72893349	0.86[AFR][1000 genomes]
rs72895223	0.86[AFR][1000 genomes]
rs72895240	0.86[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs72898679	0.88[EUR][1000 genomes]
rs72898690	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899252	0.86[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs72899256	0.86[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs72899265	0.86[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs72900656	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72902452	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72902489	0.80[AMR][1000 genomes]
rs72904948	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72904991	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72906932	0.86[AFR][1000 genomes]
rs72910645	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7584162	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7588800	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs840606	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs858745	0.88[CEU][hapmap]
rs858750	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949700	chr2:187713412-188361211	Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1003061	chr2:187950057-188282330	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1000617	chr2:187950057-188290511	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv533935	chr2:188089148-188284766	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:188161400-188162800	Enhancers	Adipose Nuclei	Adipose
2	chr2:188161600-188162800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr2:188162400-188163000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr2:188162400-188163000	Enhancers	Placenta Amnion	Placenta Amnion
5	chr2:188162400-188166800	Enhancers	HUVEC	blood vessel
6	chr2:188162600-188162800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr2:188162600-188164200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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