Variant report

Variant	rs72898690
Chromosome Location	chr2:188178354-188178355
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11887657	0.86[EUR][1000 genomes]
rs13432953	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1398062	0.99[EUR][1000 genomes]
rs1511878	0.84[ASN][1000 genomes]
rs17366895	0.99[EUR][1000 genomes]
rs17705816	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17705846	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28866036	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3213738	0.88[EUR][1000 genomes]
rs3771077	0.86[EUR][1000 genomes]
rs3771083	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3771088	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3771095	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3815524	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4482438	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs58059768	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs58601170	0.87[ASN][1000 genomes]
rs59646699	0.87[ASN][1000 genomes]
rs67285489	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6729250	0.99[EUR][1000 genomes]
rs6753578	0.99[EUR][1000 genomes]
rs67937232	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67965661	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72895240	0.82[ASN][1000 genomes]
rs72899252	0.82[ASN][1000 genomes]
rs72899256	0.82[ASN][1000 genomes]
rs72899265	0.82[ASN][1000 genomes]
rs72900656	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72900687	0.84[EUR][1000 genomes]
rs72902452	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72902489	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72904948	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72904991	0.87[ASN][1000 genomes]
rs72910645	0.87[ASN][1000 genomes]
rs7584162	0.87[ASN][1000 genomes]
rs7588800	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs840606	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949700	chr2:187713412-188361211	Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1003061	chr2:187950057-188282330	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1000617	chr2:187950057-188290511	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv533935	chr2:188089148-188284766	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:188175800-188180800	Weak transcription	HUVEC	blood vessel

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