Variant report

Variant	rs72900656
Chromosome Location	chr2:188204974-188204975
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11887657	0.87[EUR][1000 genomes]
rs13432953	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1398062	1.00[EUR][1000 genomes]
rs1511878	0.81[ASN][1000 genomes]
rs17366895	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17705816	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17705846	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28866036	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3213738	0.90[EUR][1000 genomes]
rs3771077	0.87[EUR][1000 genomes]
rs3771083	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3771088	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3771095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3815524	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4482438	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58059768	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58601170	0.85[ASN][1000 genomes]
rs59646699	0.85[ASN][1000 genomes]
rs67285489	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6729250	1.00[EUR][1000 genomes]
rs6753578	1.00[EUR][1000 genomes]
rs67937232	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67965661	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72895223	0.86[AFR][1000 genomes]
rs72895240	0.86[AFR][1000 genomes]
rs72898690	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72899252	0.86[AFR][1000 genomes]
rs72899256	0.86[AFR][1000 genomes]
rs72899265	0.86[AFR][1000 genomes]
rs72900687	0.85[EUR][1000 genomes]
rs72902452	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72902489	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72904948	0.86[AFR][1000 genomes]
rs72904991	0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs72910645	0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7584162	0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7588800	0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs840606	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949700	chr2:187713412-188361211	Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1003061	chr2:187950057-188282330	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1000617	chr2:187950057-188290511	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv533935	chr2:188089148-188284766	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv834487	chr2:188182556-188353363	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	esv3433299	chr2:188204957-188207055	Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:188203200-188218200	Weak transcription	Aorta	Aorta
2	chr2:188203800-188210200	Weak transcription	Ovary	ovary
3	chr2:188203800-188210400	Weak transcription	Left Ventricle	heart
4	chr2:188203800-188222400	Weak transcription	Fetal Muscle Leg	muscle
5	chr2:188204000-188253600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr2:188204600-188206800	Weak transcription	HUVEC	blood vessel
7	chr2:188204600-188213400	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links