Variant report

Variant	rs1770880
Chromosome Location	chr1:76458293-76458294
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1021462	0.91[JPT][hapmap]
rs10732724	0.87[CHB][hapmap];0.87[JPT][hapmap]
rs10873804	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs11161731	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs11161852	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs11161887	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs12021750	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs12024645	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs12033058	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs12044211	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs12407107	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs12409592	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs12410373	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs1251550	0.82[AFR][1000 genomes]
rs1251551	0.84[AFR][1000 genomes]
rs12567390	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs12732495	0.80[JPT][hapmap]
rs1303870	0.81[JPT][hapmap]
rs1572859	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1689271	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs17649675	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs1796812	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs1908089	0.82[JPT][hapmap]
rs2066213	0.82[JPT][hapmap]
rs2792664	0.84[AFR][1000 genomes]
rs35290302	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs3737574	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs3795251	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs3819949	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs5745314	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs5745334	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs5745429	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs5745448	0.86[JPT][hapmap]
rs5745464	0.82[JPT][hapmap]
rs5745523	0.86[JPT][hapmap]
rs5745532	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs5745546	0.87[JPT][hapmap]
rs6685657	0.83[ASN][1000 genomes]
rs6693002	0.81[ASN][1000 genomes]
rs7525919	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs7545057	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs931506	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014072	chr1:76200531-76460726	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv535005	chr1:76200531-76460726	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76458000-76458400	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr1:76458200-76466600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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