Variant report

Variant	rs1770916
Chromosome Location	chr1:192808766-192808767
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1770915	0.83[GIH][hapmap]
rs1770917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1770919	1.00[EUR][1000 genomes]
rs1770920	1.00[EUR][1000 genomes]
rs1775684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1775687	0.83[GIH][hapmap]
rs2153084	1.00[EUR][1000 genomes]
rs2185124	1.00[EUR][1000 genomes]
rs2746074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2788405	0.94[EUR][1000 genomes]
rs2797396	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35000062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs710143	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs859889	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv548660	chr1:192609268-192945348	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192795400-192809000	Weak transcription	Placenta	Placenta
2	chr1:192804600-192810800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr1:192807000-192809800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr1:192807000-192809800	Enhancers	H1 Cell Line	embryonic stem cell
5	chr1:192807200-192816000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr1:192807400-192810600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:192807800-192808800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr1:192807800-192809000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr1:192808200-192809000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
10	chr1:192808200-192809000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr1:192808200-192809200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr1:192808600-192808800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr1:192808600-192809000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links