Variant report

Variant	rs35000062
Chromosome Location	chr1:192803806-192803807
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:192774228..192777200-chr1:192803483..192805431,2	MCF-7	breast:
2	chr1:192775766..192777613-chr1:192802344..192805276,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1770915	0.83[GIH][hapmap]
rs1770916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1770917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1770919	1.00[EUR][1000 genomes]
rs1770920	1.00[EUR][1000 genomes]
rs1775684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1775687	0.83[GIH][hapmap]
rs2153084	1.00[EUR][1000 genomes]
rs2185124	1.00[EUR][1000 genomes]
rs2746074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2788405	0.94[EUR][1000 genomes]
rs2797396	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs710143	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs859889	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv548660	chr1:192609268-192945348	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192795400-192809000	Weak transcription	Placenta	Placenta
2	chr1:192796200-192807000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr1:192797400-192804400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:192800200-192804600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:192800400-192805000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:192800600-192805000	Enhancers	NHEK	skin
7	chr1:192800800-192807000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr1:192801000-192807000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr1:192801200-192804000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:192801200-192807000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr1:192801800-192804400	Enhancers	Rectal Smooth Muscle	rectum
12	chr1:192802600-192804600	Enhancers	Hela-S3	cervix
13	chr1:192802800-192805000	Enhancers	HMEC	breast
14	chr1:192803000-192804000	Enhancers	Adipose Nuclei	Adipose
15	chr1:192803000-192804400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr1:192803000-192804800	Enhancers	Colon Smooth Muscle	Colon
17	chr1:192803200-192804000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr1:192803200-192804400	Weak transcription	Ovary	ovary
19	chr1:192803200-192804600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr1:192803600-192804000	Enhancers	Muscle Satellite Cultured Cells	--
21	chr1:192803600-192804600	Enhancers	Pancreatic Islets	Pancreatic Islet
22	chr1:192803600-192804600	Enhancers	Fetal Lung	lung
23	chr1:192803600-192805200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr1:192803800-192804400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr1:192803800-192804400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr1:192803800-192804800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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