Variant report

Variant	rs17715160
Chromosome Location	chr9:3263642-3263643
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:3263553..3265198-chr9:3266270..3268417,2	K562	blood:

Extended variants
information (count: 138 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:131)

rs_ID	r²[population]
rs10429463	0.91[CEU][hapmap];1.00[CHB][hapmap];0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1147822	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs11998979	0.92[CEU][hapmap];0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs12004313	0.88[EUR][1000 genomes]
rs12004744	0.85[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs13296552	0.82[CHB][hapmap]
rs16916423	0.92[CEU][hapmap];0.82[CHB][hapmap];0.87[EUR][1000 genomes]
rs17658724	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17658838	0.92[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17715051	0.82[EUR][1000 genomes]
rs17715317	0.85[CEU][hapmap];0.82[CHB][hapmap];0.90[EUR][1000 genomes]
rs17715329	0.84[EUR][1000 genomes]
rs2274487	0.82[CHB][hapmap]
rs2304928	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2920363	0.83[EUR][1000 genomes]
rs2920369	0.84[CEU][hapmap];0.82[CHB][hapmap];0.87[EUR][1000 genomes]
rs2920370	0.83[CEU][hapmap];0.82[CHB][hapmap];0.88[EUR][1000 genomes]
rs2920376	0.82[CHB][hapmap]
rs2920377	0.82[CHB][hapmap]
rs2920378	0.82[CHB][hapmap]
rs2920379	0.82[CHB][hapmap]
rs2920380	0.82[CHB][hapmap]
rs2920381	0.85[CEU][hapmap];0.82[CHB][hapmap]
rs2920382	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs2920383	0.86[EUR][1000 genomes]
rs2986678	0.82[CHB][hapmap]
rs2986679	0.82[CHB][hapmap]
rs2986680	0.82[CHB][hapmap]
rs2986684	1.00[CHB][hapmap]
rs2986686	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs2986687	0.85[CEU][hapmap];0.82[CHB][hapmap];0.83[EUR][1000 genomes]
rs2986688	0.82[CHB][hapmap]
rs2986690	0.85[CEU][hapmap];0.82[CHB][hapmap]
rs2986691	0.82[CHB][hapmap]
rs2986693	0.82[CHB][hapmap]
rs2986694	0.82[CHB][hapmap]
rs2986695	0.85[CEU][hapmap];0.82[CHB][hapmap];0.85[EUR][1000 genomes]
rs2986696	0.85[CEU][hapmap];0.82[CHB][hapmap];0.85[EUR][1000 genomes]
rs2986697	0.83[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs2986698	0.85[CEU][hapmap];0.82[CHB][hapmap];0.85[EUR][1000 genomes]
rs2986700	0.85[CEU][hapmap];0.82[CHB][hapmap];0.86[EUR][1000 genomes]
rs2986701	1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs2986702	0.83[EUR][1000 genomes]
rs2986703	0.82[EUR][1000 genomes]
rs2991297	0.85[CEU][hapmap];0.82[CHB][hapmap]
rs2991298	0.91[CEU][hapmap];0.82[CHB][hapmap]
rs2991300	0.85[CEU][hapmap];0.82[CHB][hapmap]
rs2991301	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs2991302	0.82[CHB][hapmap]
rs2991304	0.82[CHB][hapmap]
rs2991305	0.84[CEU][hapmap];0.82[CHB][hapmap];0.86[EUR][1000 genomes]
rs2991306	0.82[CHB][hapmap]
rs2991307	0.82[CHB][hapmap];0.85[EUR][1000 genomes]
rs2991308	0.85[CEU][hapmap];0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs2991309	0.82[CHB][hapmap]
rs2991310	0.85[CEU][hapmap];0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs2991311	0.85[CEU][hapmap];0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs2991314	0.82[CHB][hapmap]
rs2991315	0.82[CHB][hapmap]
rs2991317	0.82[CHB][hapmap]
rs2991318	0.85[CEU][hapmap];0.82[CHB][hapmap]
rs2991319	0.82[CHB][hapmap]
rs2991320	0.82[CHB][hapmap]
rs2991321	0.82[CHB][hapmap]
rs2991322	0.82[CHB][hapmap]
rs2991323	0.82[CHB][hapmap]
rs3012670	0.82[CHB][hapmap]
rs3012672	0.82[CHB][hapmap]
rs3012686	0.91[CEU][hapmap];0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs3012688	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs3012693	0.92[CEU][hapmap];0.82[CHB][hapmap];0.87[EUR][1000 genomes]
rs3012694	0.82[CHB][hapmap]
rs3012695	0.85[CEU][hapmap];0.82[CHB][hapmap];0.88[EUR][1000 genomes]
rs3012696	0.83[CEU][hapmap];0.82[CHB][hapmap];0.88[EUR][1000 genomes]
rs3012700	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs3012701	0.85[CEU][hapmap];0.82[CHB][hapmap];0.83[EUR][1000 genomes]
rs3012706	0.85[CEU][hapmap];0.82[CHB][hapmap]
rs3012707	0.82[EUR][1000 genomes]
rs3012708	0.82[CHB][hapmap]
rs3012709	0.82[CHB][hapmap]
rs3012710	0.85[CEU][hapmap];0.82[CHB][hapmap];0.83[EUR][1000 genomes]
rs3012711	0.82[CHB][hapmap]
rs3012712	0.83[CEU][hapmap];0.82[CHB][hapmap]
rs3012713	0.82[CHB][hapmap]
rs4008965	0.83[EUR][1000 genomes]
rs41312820	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs490961	0.92[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs494348	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs506149	0.85[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs527697	0.88[EUR][1000 genomes]
rs535305	0.81[EUR][1000 genomes]
rs535614	0.85[CEU][hapmap]
rs540859	0.83[EUR][1000 genomes]
rs57295144	0.84[EUR][1000 genomes]
rs576347	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58010475	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59378342	0.84[EUR][1000 genomes]
rs594370	0.92[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs612198	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs617047	0.85[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs617992	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs619401	0.85[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs625941	0.85[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs633893	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs636548	0.92[CEU][hapmap]
rs649990	0.85[CEU][hapmap]
rs656686	0.85[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs658123	0.92[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs7025201	0.85[CEU][hapmap];0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs7025328	0.85[CEU][hapmap];0.82[CHB][hapmap];0.87[EUR][1000 genomes]
rs7035429	0.85[CEU][hapmap];0.82[CHB][hapmap]
rs7044448	0.89[EUR][1000 genomes]
rs72699004	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72699014	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72699023	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72699033	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72699037	0.86[EUR][1000 genomes]
rs72699039	0.89[EUR][1000 genomes]
rs72699050	0.82[EUR][1000 genomes]
rs72699051	0.86[EUR][1000 genomes]
rs7850660	0.82[CHB][hapmap]
rs7850999	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs7855172	0.87[AFR][1000 genomes]
rs7855364	0.82[CHB][hapmap]
rs7859468	0.83[EUR][1000 genomes]
rs7860020	0.83[EUR][1000 genomes]
rs7861667	0.82[CHB][hapmap]
rs7861699	0.82[CHB][hapmap]
rs7866129	0.84[EUR][1000 genomes]
rs7868041	0.86[EUR][1000 genomes]
rs7871277	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892086	chr9:3012276-3410838	Bivalent Enhancer ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1032921	chr9:3139007-3502815	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv539940	chr9:3139007-3502815	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv466090	chr9:3237378-3349487	Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv613145	chr9:3237378-3349487	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1032529	chr9:3254763-3319778	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv539941	chr9:3254763-3319778	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:3220400-3287400	Weak transcription	Psoas Muscle	Psoas
2	chr9:3222200-3269400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr9:3223200-3277000	Weak transcription	HSMMtube	muscle
4	chr9:3223400-3270200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr9:3223600-3264400	Weak transcription	Fetal Intestine Small	intestine
6	chr9:3223600-3271600	Weak transcription	Lung	lung
7	chr9:3223600-3284800	Weak transcription	Spleen	Spleen
8	chr9:3224000-3275800	Weak transcription	Gastric	stomach
9	chr9:3226600-3289600	Weak transcription	Colon Smooth Muscle	Colon
10	chr9:3233600-3292600	Weak transcription	Pancreas	Pancrea
11	chr9:3234800-3294400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr9:3235800-3269800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr9:3236200-3271600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr9:3236800-3266600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr9:3238000-3276800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr9:3238600-3263800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr9:3241400-3278000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr9:3241600-3276800	Weak transcription	Placenta	Placenta
19	chr9:3241800-3271200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr9:3242000-3278000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr9:3242200-3287800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr9:3243800-3279200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr9:3244000-3268200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr9:3244200-3338400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr9:3245000-3265800	Weak transcription	Stomach Mucosa	stomach
26	chr9:3245000-3275000	Weak transcription	HSMM	muscle
27	chr9:3245600-3277200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr9:3246800-3287000	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr9:3250200-3276400	Weak transcription	HepG2	liver
30	chr9:3251600-3292600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr9:3252800-3278600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr9:3254200-3285600	Weak transcription	Fetal Heart	heart
33	chr9:3254800-3272000	Weak transcription	NH-A	brain
34	chr9:3255000-3293000	Weak transcription	Small Intestine	intestine
35	chr9:3255800-3264800	Weak transcription	Brain Angular Gyrus	brain
36	chr9:3255800-3292800	Weak transcription	Fetal Muscle Leg	muscle
37	chr9:3256800-3293400	Weak transcription	Right Ventricle	heart
38	chr9:3257000-3289000	Weak transcription	Fetal Brain Male	brain
39	chr9:3257200-3263800	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr9:3257200-3264600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr9:3257200-3264600	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr9:3257200-3264600	Weak transcription	Stomach Smooth Muscle	stomach
43	chr9:3257200-3264800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr9:3257200-3270200	Weak transcription	Thymus	Thymus
45	chr9:3257200-3274200	Weak transcription	Fetal Brain Female	brain
46	chr9:3257200-3275000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr9:3257200-3290200	Weak transcription	Brain Germinal Matrix	brain
48	chr9:3257200-3290200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr9:3257200-3290200	Weak transcription	Brain Substantia Nigra	brain
50	chr9:3257200-3294000	Weak transcription	Brain Cingulate Gyrus	brain

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