Variant report

Variant	rs17724333
Chromosome Location	chr19:42119080-42119081
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:42118056..42120670-chr19:42122238..42124677,3	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1029804	0.91[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs10420203	0.99[ASN][1000 genomes]
rs11671442	0.91[ASN][1000 genomes]
rs12463151	0.91[ASN][1000 genomes]
rs12972738	0.85[ASN][1000 genomes]
rs12983687	0.89[ASN][1000 genomes]
rs12983719	0.89[ASN][1000 genomes]
rs12984811	0.89[ASN][1000 genomes]
rs2019253	0.94[ASN][1000 genomes]
rs2019254	0.94[ASN][1000 genomes]
rs2109245	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2159442	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2159443	0.94[ASN][1000 genomes]
rs2215324	0.89[ASN][1000 genomes]
rs2317315	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28617711	0.94[ASN][1000 genomes]
rs3745931	1.00[ASN][1000 genomes]
rs3745932	0.91[ASN][1000 genomes]
rs3745933	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3848567	0.95[ASN][1000 genomes]
rs3890967	0.94[ASN][1000 genomes]
rs3890968	0.94[ASN][1000 genomes]
rs3901991	0.95[CHB][hapmap];0.85[JPT][hapmap];0.85[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3909375	0.94[ASN][1000 genomes]
rs3909376	0.94[ASN][1000 genomes]
rs4405658	0.85[CHB][hapmap]
rs4803487	0.89[ASN][1000 genomes]
rs59581960	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61491423	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6508984	0.96[ASN][1000 genomes]
rs6508985	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6508986	0.91[ASN][1000 genomes]
rs6508987	0.91[ASN][1000 genomes]
rs73035509	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73035517	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73043189	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73045005	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73931731	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8104928	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8111279	0.86[ASN][1000 genomes]
rs929501	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs929503	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057624	chr19:42057334-42152828	Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1058847	chr19:42057334-42172442	Bivalent/Poised TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1063241	chr19:42057334-42175160	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv519408	chr19:42066279-42171906	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv3319146	chr19:42082639-42212929	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	esv3319147	chr19:42082742-42212770	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	esv3422975	chr19:42106166-42212774	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv961159	chr19:42113316-42119215	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3375687	chr19:42116984-42119289	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv3318128	chr19:42117013-42119274	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3318127	chr19:42117054-42119226	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3318130	chr19:42117054-42119226	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv11752	chr19:42117147-42119152	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42117200-42121400	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr19:42118200-42131600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr19:42118400-42119400	Enhancers	Primary B cells from cord blood	blood
4	chr19:42118600-42119800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr19:42118800-42119600	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr19:42118800-42125200	Weak transcription	Primary hematopoietic stem cells	blood

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