Variant report

Variant	rs6508984
Chromosome Location	chr19:42107792-42107793
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:42106606..42108496-chr19:42155878..42157427,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CEACAM21-4	chr19:42107567-42107882	NONHSAT066475

Variant related genes	Relation type
ENSG00000268582	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1029804	0.83[ASN][1000 genomes]
rs10420203	0.96[ASN][1000 genomes]
rs11671442	0.94[ASN][1000 genomes]
rs12463151	0.94[ASN][1000 genomes]
rs12972738	0.88[ASN][1000 genomes]
rs12983687	0.85[ASN][1000 genomes]
rs12983719	0.85[ASN][1000 genomes]
rs12984811	0.85[ASN][1000 genomes]
rs17724333	0.96[ASN][1000 genomes]
rs2019253	0.91[ASN][1000 genomes]
rs2019254	0.91[ASN][1000 genomes]
rs2109245	0.91[ASN][1000 genomes]
rs2159442	0.91[ASN][1000 genomes]
rs2159443	0.91[ASN][1000 genomes]
rs2215324	0.85[ASN][1000 genomes]
rs2317315	0.96[ASN][1000 genomes]
rs28617711	0.91[ASN][1000 genomes]
rs3745931	0.96[ASN][1000 genomes]
rs3745932	0.94[ASN][1000 genomes]
rs3745933	0.89[ASN][1000 genomes]
rs3848566	0.81[ASN][1000 genomes]
rs3848567	0.91[ASN][1000 genomes]
rs3890967	0.91[ASN][1000 genomes]
rs3890968	0.91[ASN][1000 genomes]
rs3901991	0.91[ASN][1000 genomes]
rs3909375	0.90[ASN][1000 genomes]
rs3909376	0.90[ASN][1000 genomes]
rs4803487	0.85[ASN][1000 genomes]
rs59581960	0.90[ASN][1000 genomes]
rs61491423	0.92[ASN][1000 genomes]
rs6508985	0.96[ASN][1000 genomes]
rs6508986	0.93[ASN][1000 genomes]
rs6508987	0.92[ASN][1000 genomes]
rs73035509	0.96[ASN][1000 genomes]
rs73035517	0.91[ASN][1000 genomes]
rs73043189	0.91[ASN][1000 genomes]
rs73045005	0.91[ASN][1000 genomes]
rs73931731	0.91[ASN][1000 genomes]
rs8111279	0.88[ASN][1000 genomes]
rs929501	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057624	chr19:42057334-42152828	Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1058847	chr19:42057334-42172442	Bivalent/Poised TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1063241	chr19:42057334-42175160	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv519408	chr19:42066279-42171906	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv3319146	chr19:42082639-42212929	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	esv3319147	chr19:42082742-42212770	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	esv3422975	chr19:42106166-42212774	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42104200-42115000	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr19:42105400-42108600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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