Variant report

Variant	rs3909376
Chromosome Location	chr19:42117071-42117072
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:42116399..42118234-chr19:42119238..42121472,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1029804	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs10420203	0.93[ASN][1000 genomes]
rs11671442	0.86[ASN][1000 genomes]
rs12463151	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12972738	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12983687	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12983719	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12984811	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17724333	0.94[ASN][1000 genomes]
rs2019253	0.89[ASN][1000 genomes]
rs2019254	0.89[ASN][1000 genomes]
rs2109245	0.89[ASN][1000 genomes]
rs2159442	0.89[ASN][1000 genomes]
rs2159443	0.89[ASN][1000 genomes]
rs2215324	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2317315	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs28617711	0.89[ASN][1000 genomes]
rs3745931	0.94[ASN][1000 genomes]
rs3745932	0.86[ASN][1000 genomes]
rs3745933	0.91[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs3848567	0.89[ASN][1000 genomes]
rs3890967	0.89[ASN][1000 genomes]
rs3890968	0.89[ASN][1000 genomes]
rs3901991	0.90[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs3909375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4090570	0.83[CEU][hapmap]
rs4405658	0.81[CHB][hapmap]
rs4803487	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59581960	0.89[ASN][1000 genomes]
rs61491423	0.88[ASN][1000 genomes]
rs6508984	0.90[ASN][1000 genomes]
rs6508985	0.93[ASN][1000 genomes]
rs6508986	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6508987	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73035509	0.91[ASN][1000 genomes]
rs73035517	0.89[ASN][1000 genomes]
rs73043189	0.89[ASN][1000 genomes]
rs73045005	0.89[ASN][1000 genomes]
rs73931731	0.89[ASN][1000 genomes]
rs8111279	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs929501	0.89[ASN][1000 genomes]
rs929503	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057624	chr19:42057334-42152828	Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1058847	chr19:42057334-42172442	Bivalent/Poised TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1063241	chr19:42057334-42175160	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv519408	chr19:42066279-42171906	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv3319146	chr19:42082639-42212929	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	esv3319147	chr19:42082742-42212770	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	esv3422975	chr19:42106166-42212774	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv961159	chr19:42113316-42119215	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3375687	chr19:42116984-42119289	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv3318128	chr19:42117013-42119274	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3318127	chr19:42117054-42119226	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3318130	chr19:42117054-42119226	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42115400-42117200	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr19:42117000-42117400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr19:42117000-42117800	Enhancers	Monocytes-CD14+_RO01746	blood

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