Variant report

Variant	rs17734024
Chromosome Location	chr8:9635770-9635771
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11774818	0.87[CEU][hapmap]
rs11775432	0.88[CEU][hapmap]
rs11780274	1.00[ASW][hapmap];0.88[CEU][hapmap];0.89[TSI][hapmap]
rs11991547	0.88[CEU][hapmap]
rs11994018	0.88[CEU][hapmap];0.89[TSI][hapmap]
rs13250838	1.00[CEU][hapmap]
rs13261385	0.88[CEU][hapmap]
rs13264510	0.87[CEU][hapmap]
rs1393	0.88[CEU][hapmap];0.89[TSI][hapmap]
rs4128324	0.88[CEU][hapmap];0.89[TSI][hapmap]
rs4272381	1.00[ASW][hapmap]
rs4289816	0.94[TSI][hapmap]
rs4535743	1.00[ASW][hapmap];0.89[TSI][hapmap]
rs4551359	0.82[CEU][hapmap]
rs4570159	0.85[CEU][hapmap]
rs4840432	0.87[CEU][hapmap]
rs4841186	0.88[CEU][hapmap]
rs7839648	0.88[CEU][hapmap];0.89[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17734024	FLJ10661	cis	cerebellum	SCAN

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9566000-9639400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr8:9570000-9638600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:9603000-9638800	Weak transcription	Stomach Mucosa	stomach
4	chr8:9604200-9637200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:9618400-9637200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr8:9623800-9638800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr8:9626200-9638800	Weak transcription	Small Intestine	intestine
8	chr8:9626400-9640000	Weak transcription	Gastric	stomach
9	chr8:9627800-9638400	Weak transcription	Fetal Brain Male	brain
10	chr8:9628000-9637400	Weak transcription	K562	blood
11	chr8:9628200-9636800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr8:9628200-9638800	Weak transcription	Psoas Muscle	Psoas
13	chr8:9628200-9640000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr8:9628200-9640200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr8:9628400-9638000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr8:9628400-9638000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr8:9628400-9638800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr8:9628600-9636800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr8:9628600-9637000	Weak transcription	HepG2	liver
20	chr8:9628600-9640400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr8:9628800-9638000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr8:9628800-9639000	Weak transcription	Fetal Kidney	kidney
23	chr8:9628800-9639200	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr8:9629000-9635800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr8:9629200-9638000	Weak transcription	Brain Angular Gyrus	brain
26	chr8:9632000-9637000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr8:9632000-9637200	Strong transcription	Fetal Lung	lung
28	chr8:9632000-9637400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr8:9632200-9637600	Strong transcription	Cortex derived primary cultured neurospheres	brain
30	chr8:9632600-9637000	Weak transcription	Pancreas	Pancrea
31	chr8:9633000-9636000	Strong transcription	Dnd41	blood
32	chr8:9633200-9636200	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr8:9633200-9636200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr8:9633200-9636600	Strong transcription	Liver	Liver
35	chr8:9633200-9636800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr8:9633200-9637000	Strong transcription	Primary B cells from cord blood	blood
37	chr8:9633200-9637200	Strong transcription	Primary T cells from cord blood	blood
38	chr8:9633400-9636400	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr8:9633400-9636600	Strong transcription	Sigmoid Colon	Sigmoid Colon
40	chr8:9633400-9637000	Strong transcription	Adipose Nuclei	Adipose
41	chr8:9633400-9637200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr8:9633400-9637200	Strong transcription	Fetal Muscle Trunk	muscle
43	chr8:9633400-9637400	Strong transcription	HUES6 Cell Line	embryonic stem cell
44	chr8:9633400-9637400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr8:9633400-9637400	Strong transcription	Fetal Intestine Large	intestine
46	chr8:9633400-9637400	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr8:9633600-9635800	Strong transcription	Skeletal Muscle Female	skeletal muscle
48	chr8:9633600-9636000	Strong transcription	Brain Substantia Nigra	brain
49	chr8:9633600-9636000	Strong transcription	Skeletal Muscle Male	skeletal muscle
50	chr8:9633600-9636600	Strong transcription	Rectal Mucosa Donor 29	rectum

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