Variant report

Variant	rs13261385
Chromosome Location	chr8:9530674-9530675
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10109688	0.83[EUR][1000 genomes]
rs11773928	0.94[ASN][1000 genomes]
rs11774818	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11775432	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11776105	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11776199	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11777891	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11780274	1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11780757	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11784858	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11991483	0.85[ASN][1000 genomes]
rs11991547	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes]
rs11994018	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs12547639	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13249570	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13250838	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13256808	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs13256939	0.82[AMR][1000 genomes]
rs13258733	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13259379	0.90[CEU][hapmap]
rs13263825	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13264510	1.00[CEU][hapmap];0.91[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13265363	0.88[CEU][hapmap];0.93[CHB][hapmap]
rs13267100	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13268770	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13270240	0.86[CEU][hapmap];0.85[CHB][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13273330	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13273771	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13274310	1.00[CEU][hapmap];0.93[CHB][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13275867	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13276464	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13277588	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13280515	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13282049	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1393	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17734024	0.88[CEU][hapmap]
rs28696132	0.81[EUR][1000 genomes]
rs28711551	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34074860	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs34095920	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34173677	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34182142	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34319155	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34393110	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34422213	0.88[ASN][1000 genomes]
rs34638238	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34638769	0.85[ASN][1000 genomes]
rs34679455	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34848966	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34926681	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34973657	0.83[AMR][1000 genomes]
rs35017872	0.86[EUR][1000 genomes]
rs35054885	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35197051	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35341965	0.81[ASN][1000 genomes]
rs35361105	0.82[EUR][1000 genomes]
rs35599091	0.80[EUR][1000 genomes]
rs35700558	0.80[EUR][1000 genomes]
rs35722901	0.86[AMR][1000 genomes]
rs35812948	0.81[EUR][1000 genomes]
rs35890521	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs36090374	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36092720	0.87[ASN][1000 genomes]
rs4128324	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4263773	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4272381	0.93[CHB][hapmap];0.93[JPT][hapmap];0.98[ASN][1000 genomes]
rs4282576	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4289816	0.88[CEU][hapmap];0.80[CHB][hapmap];0.80[JPT][hapmap];0.80[ASN][1000 genomes]
rs4376499	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4428676	0.80[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4458881	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4493906	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4535743	0.88[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4551359	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4570159	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4840432	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4841172	0.81[AMR][1000 genomes]
rs4841186	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4841194	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4841195	0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4841198	0.89[ASN][1000 genomes]
rs58391561	0.95[ASN][1000 genomes]
rs62493904	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62493905	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7013834	1.00[CEU][hapmap];0.87[CHB][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71516518	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71516523	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs71516533	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7463594	0.82[EUR][1000 genomes]
rs7824880	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7839648	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes]
rs9650636	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv497927	chr8:9097611-9544519	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9495800-9531000	Weak transcription	Gastric	stomach
2	chr8:9501800-9534400	Weak transcription	Fetal Heart	heart
3	chr8:9504800-9549600	Weak transcription	Pancreas	Pancrea
4	chr8:9509400-9545000	Weak transcription	HSMM	muscle
5	chr8:9509600-9532000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:9510400-9563800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr8:9511000-9564200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr8:9511400-9537000	Weak transcription	Left Ventricle	heart
9	chr8:9511600-9554600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:9512400-9551400	Weak transcription	Dnd41	blood
11	chr8:9512600-9537200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr8:9512600-9543800	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr8:9513200-9534000	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr8:9513200-9564200	Weak transcription	Ovary	ovary
15	chr8:9513200-9567400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr8:9513400-9605400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr8:9513600-9543600	Weak transcription	Fetal Stomach	stomach
18	chr8:9513800-9563600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr8:9516200-9532000	Weak transcription	Fetal Intestine Large	intestine
20	chr8:9521000-9544800	Weak transcription	Primary B cells from peripheral blood	blood
21	chr8:9521400-9544200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr8:9521800-9531800	Weak transcription	Fetal Intestine Small	intestine
23	chr8:9522000-9533800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr8:9522000-9545000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr8:9522400-9546000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr8:9523600-9534000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr8:9523600-9534400	Weak transcription	Brain Anterior Caudate	brain
28	chr8:9523800-9534000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr8:9523800-9545000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr8:9524200-9544600	Weak transcription	Primary hematopoietic stem cells	blood
31	chr8:9527200-9530800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr8:9527200-9531200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr8:9527400-9530800	Enhancers	Primary T cells from cord blood	blood
34	chr8:9527400-9534200	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr8:9527800-9534200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr8:9528200-9534400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr8:9528600-9536800	Weak transcription	Primary B cells from cord blood	blood
38	chr8:9528600-9536800	Weak transcription	Brain Angular Gyrus	brain
39	chr8:9528800-9534400	Weak transcription	Fetal Lung	lung
40	chr8:9529000-9534400	Weak transcription	Brain Substantia Nigra	brain
41	chr8:9529000-9534400	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr8:9529200-9530800	Enhancers	Primary T killer memory cells from peripheral blood	blood
43	chr8:9529400-9533400	Enhancers	Liver	Liver
44	chr8:9529600-9531200	Weak transcription	GM12878-XiMat	blood
45	chr8:9529600-9545000	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr8:9529600-9545000	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr8:9529600-9549000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr8:9529600-9606400	Weak transcription	Esophagus	oesophagus
49	chr8:9529800-9530800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr8:9529800-9534000	Weak transcription	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links