Variant report

Variant	rs10109688
Chromosome Location	chr14:85835562-85835563
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10090598	0.81[EUR][1000 genomes]
rs11774818	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11775432	0.92[EUR][1000 genomes]
rs11776199	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11777891	0.89[EUR][1000 genomes]
rs11780274	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11780757	0.89[EUR][1000 genomes]
rs11784858	0.88[EUR][1000 genomes]
rs11991547	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11994018	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12547639	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13249570	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13250838	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13256808	0.81[ASN][1000 genomes]
rs13256939	0.84[EUR][1000 genomes]
rs13258733	0.88[EUR][1000 genomes]
rs13261385	0.83[EUR][1000 genomes]
rs13263825	0.92[EUR][1000 genomes]
rs13264510	0.83[EUR][1000 genomes]
rs13265363	0.84[EUR][1000 genomes]
rs13267100	0.90[EUR][1000 genomes]
rs13268770	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13270240	0.88[EUR][1000 genomes]
rs13273330	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13273771	0.92[EUR][1000 genomes]
rs13274310	0.86[EUR][1000 genomes]
rs13275867	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13276464	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13277588	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13280515	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13282049	0.92[EUR][1000 genomes]
rs1393	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28696132	0.89[EUR][1000 genomes]
rs28711551	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34074860	0.80[ASN][1000 genomes]
rs34095920	0.88[EUR][1000 genomes]
rs34173677	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34182142	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34319155	0.89[EUR][1000 genomes]
rs34393110	0.88[EUR][1000 genomes]
rs34413242	0.80[EUR][1000 genomes]
rs34638238	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34679455	0.87[EUR][1000 genomes]
rs34848966	0.86[EUR][1000 genomes]
rs34926681	0.93[EUR][1000 genomes]
rs34973657	0.85[EUR][1000 genomes]
rs35017872	0.92[EUR][1000 genomes]
rs35054885	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35197051	0.86[EUR][1000 genomes]
rs35361105	0.90[EUR][1000 genomes]
rs35700558	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35722901	0.85[EUR][1000 genomes]
rs35812948	0.86[EUR][1000 genomes]
rs35890521	0.88[EUR][1000 genomes]
rs36090374	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4128324	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4263773	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4282576	0.82[AFR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4376499	0.92[EUR][1000 genomes]
rs4458881	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4493906	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4535743	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4551359	0.92[EUR][1000 genomes]
rs4570159	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4840432	0.94[EUR][1000 genomes]
rs4841172	0.82[EUR][1000 genomes]
rs4841186	0.94[EUR][1000 genomes]
rs4841194	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62493904	0.92[EUR][1000 genomes]
rs62493905	0.92[EUR][1000 genomes]
rs7013834	0.87[EUR][1000 genomes]
rs71516518	0.87[EUR][1000 genomes]
rs71516523	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7463594	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7824880	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7839648	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9650636	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047924	chr14:85826280-85868228	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:85832400-85840200	Weak transcription	Ovary	ovary

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