Variant report

Variant	rs13277588
Chromosome Location	chr8:9512470-9512471
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10109688	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11773928	0.83[ASN][1000 genomes]
rs11774818	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11775432	0.90[EUR][1000 genomes]
rs11776199	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11777891	0.88[EUR][1000 genomes]
rs11780274	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11780757	0.88[EUR][1000 genomes]
rs11784858	0.86[EUR][1000 genomes]
rs11991547	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11994018	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12547639	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13249570	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13250838	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13256808	0.90[ASN][1000 genomes]
rs13256939	0.83[EUR][1000 genomes]
rs13258733	0.86[EUR][1000 genomes]
rs13261385	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13263825	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13264510	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13265363	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13267100	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13268770	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13270240	0.86[EUR][1000 genomes]
rs13273330	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13273771	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13274310	0.85[EUR][1000 genomes]
rs13275867	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13276464	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13280515	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13282049	0.90[EUR][1000 genomes]
rs1393	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28696132	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28711551	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34074860	0.88[ASN][1000 genomes]
rs34095920	0.86[EUR][1000 genomes]
rs34173677	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34182142	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34319155	0.88[EUR][1000 genomes]
rs34393110	0.86[EUR][1000 genomes]
rs34422213	0.80[AMR][1000 genomes]
rs34638238	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34679455	0.85[EUR][1000 genomes]
rs34848966	0.85[EUR][1000 genomes]
rs34926681	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34973657	0.84[EUR][1000 genomes]
rs35017872	0.90[EUR][1000 genomes]
rs35054885	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35197051	0.85[EUR][1000 genomes]
rs35361105	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35700558	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35722901	0.84[EUR][1000 genomes]
rs35812948	0.85[EUR][1000 genomes]
rs35890521	0.86[EUR][1000 genomes]
rs36090374	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4128324	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4263773	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4272381	0.85[ASN][1000 genomes]
rs4282576	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4376499	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4428676	0.84[ASN][1000 genomes]
rs4458881	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4493906	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4535743	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4551359	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4570159	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4840432	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4841172	0.81[EUR][1000 genomes]
rs4841186	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4841194	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4841195	0.83[ASN][1000 genomes]
rs58391561	0.82[ASN][1000 genomes]
rs62493904	0.90[EUR][1000 genomes]
rs62493905	0.90[EUR][1000 genomes]
rs7013834	0.86[EUR][1000 genomes]
rs71516518	0.86[EUR][1000 genomes]
rs71516523	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7463594	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7824880	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7839648	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9650636	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv497927	chr8:9097611-9544519	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9495800-9531000	Weak transcription	Gastric	stomach
2	chr8:9501600-9525400	Weak transcription	Thymus	Thymus
3	chr8:9501800-9528400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr8:9501800-9534400	Weak transcription	Fetal Heart	heart
5	chr8:9503000-9521200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr8:9504200-9529400	Weak transcription	Colon Smooth Muscle	Colon
7	chr8:9504800-9549600	Weak transcription	Pancreas	Pancrea
8	chr8:9506000-9521200	Weak transcription	Aorta	Aorta
9	chr8:9506400-9530200	Weak transcription	HepG2	liver
10	chr8:9507800-9529400	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr8:9508000-9512600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr8:9508400-9521200	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr8:9509000-9513200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
14	chr8:9509000-9513400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:9509000-9514000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr8:9509200-9522400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr8:9509400-9512600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr8:9509400-9512800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr8:9509400-9513400	Weak transcription	HSMMtube	muscle
20	chr8:9509400-9513600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr8:9509400-9516000	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr8:9509400-9523000	Weak transcription	Brain Anterior Caudate	brain
23	chr8:9509400-9545000	Weak transcription	HSMM	muscle
24	chr8:9509600-9513600	Weak transcription	HMEC	breast
25	chr8:9509600-9529400	Weak transcription	Spleen	Spleen
26	chr8:9509600-9532000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr8:9510000-9528800	Weak transcription	Stomach Smooth Muscle	stomach
28	chr8:9510200-9512600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
29	chr8:9510400-9512600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr8:9510400-9513000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
31	chr8:9510400-9513000	Weak transcription	Fetal Brain Male	brain
32	chr8:9510400-9513200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
33	chr8:9510400-9513200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
34	chr8:9510400-9563800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr8:9510600-9513600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr8:9510600-9526400	Weak transcription	NH-A	brain
37	chr8:9510800-9513400	ZNF genes & repeats	Fetal Intestine Small	intestine
38	chr8:9510800-9514000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr8:9510800-9523000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr8:9511000-9514000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr8:9511000-9514000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr8:9511000-9564200	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr8:9511200-9513200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr8:9511400-9512600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr8:9511400-9513600	ZNF genes & repeats	Fetal Lung	lung
46	chr8:9511400-9516800	Weak transcription	NHDF-Ad	bronchial
47	chr8:9511400-9520600	Weak transcription	A549	lung
48	chr8:9511400-9537000	Weak transcription	Left Ventricle	heart
49	chr8:9511600-9512600	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr8:9511600-9514600	Weak transcription	Brain Hippocampus Middle	brain

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