Variant report

Variant	rs11774818
Chromosome Location	chr8:9486463-9486464
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:9485608..9489855-chr8:9491266..9494747,4	K562	blood:

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10090598	0.83[EUR][1000 genomes]
rs10109688	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11775432	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11776199	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11777891	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11780274	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11780757	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11784858	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11785485	0.83[AMR][1000 genomes]
rs11991547	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11994018	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12547639	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13249570	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13250838	1.00[CEU][hapmap];0.84[CHB][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13256808	0.82[ASN][1000 genomes]
rs13256939	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13258733	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13259379	0.88[CEU][hapmap];0.81[CHB][hapmap]
rs13261385	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13261660	0.82[EUR][1000 genomes]
rs13263825	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13264510	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13265363	0.87[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs13267100	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13268770	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13270240	0.85[CEU][hapmap];0.92[CHB][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13273330	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13273771	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13274310	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13275867	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13276464	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13277588	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13280515	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13282049	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1393	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17150201	0.82[EUR][1000 genomes]
rs17150206	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17734024	0.87[CEU][hapmap]
rs28696132	0.92[EUR][1000 genomes]
rs28711551	0.85[EUR][1000 genomes]
rs34074860	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs34095920	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34173677	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34182142	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34319155	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34374861	0.83[AMR][1000 genomes]
rs34393110	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34413242	0.86[EUR][1000 genomes]
rs34622193	0.81[AMR][1000 genomes]
rs34638238	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34679455	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34848966	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34926681	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34973657	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35017872	0.97[EUR][1000 genomes]
rs35054885	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35075657	0.81[AMR][1000 genomes]
rs35197051	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35361105	0.93[EUR][1000 genomes]
rs35700558	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35722901	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35812948	0.92[EUR][1000 genomes]
rs35890521	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs36090374	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4128324	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4263773	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4272381	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs4282576	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4289816	0.87[CEU][hapmap];0.93[CHB][hapmap]
rs4376499	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4458881	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4493906	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4535743	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4551359	1.00[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4570159	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes]
rs4840423	0.81[AMR][1000 genomes]
rs4840432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4841172	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4841186	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4841194	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4841195	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs62493904	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62493905	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7013834	1.00[CEU][hapmap];0.93[CHB][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71516518	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71516523	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7463594	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7824880	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7839648	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9650636	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv497927	chr8:9097611-9544519	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9466400-9491000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr8:9471000-9487000	Weak transcription	HepG2	liver
3	chr8:9473200-9489400	Weak transcription	HSMM	muscle
4	chr8:9473200-9490000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:9473200-9491000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:9473200-9491200	Weak transcription	HSMMtube	muscle
7	chr8:9473400-9490000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:9474200-9509000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr8:9475200-9494400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr8:9481000-9510800	Weak transcription	Primary B cells from cord blood	blood
11	chr8:9481200-9487600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr8:9481200-9508400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr8:9481400-9487600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr8:9481800-9501400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr8:9484000-9486800	Enhancers	Brain Angular Gyrus	brain
16	chr8:9484200-9486600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr8:9484200-9487000	Enhancers	Brain Anterior Caudate	brain
18	chr8:9484400-9486800	Enhancers	Brain Cingulate Gyrus	brain
19	chr8:9484400-9487800	Enhancers	Brain Hippocampus Middle	brain
20	chr8:9484400-9489000	Enhancers	Brain Substantia Nigra	brain
21	chr8:9484600-9488800	Weak transcription	NHDF-Ad	bronchial
22	chr8:9484600-9490000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr8:9484800-9488800	Weak transcription	Colon Smooth Muscle	Colon
24	chr8:9484800-9504600	Weak transcription	Primary T cells from cord blood	blood
25	chr8:9485000-9495000	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr8:9485000-9502800	Weak transcription	Psoas Muscle	Psoas
27	chr8:9485200-9493800	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr8:9485400-9487000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr8:9485400-9487800	Enhancers	Small Intestine	intestine
30	chr8:9485600-9498200	Weak transcription	Ovary	ovary
31	chr8:9485600-9510400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr8:9485600-9510400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr8:9485800-9490800	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr8:9485800-9508000	Weak transcription	Fetal Brain Female	brain
35	chr8:9486000-9486800	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr8:9486000-9486800	Enhancers	Sigmoid Colon	Sigmoid Colon
37	chr8:9486000-9487200	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr8:9486000-9487800	Enhancers	Liver	Liver
39	chr8:9486000-9488000	Enhancers	Stomach Mucosa	stomach
40	chr8:9486200-9486800	Enhancers	H1 Cell Line	embryonic stem cell
41	chr8:9486200-9486800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr8:9486200-9487000	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr8:9486200-9487000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
44	chr8:9486200-9487200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr8:9486200-9494400	Weak transcription	Primary B cells from peripheral blood	blood
46	chr8:9486400-9486600	Enhancers	Primary T killer memory cells from peripheral blood	blood
47	chr8:9486400-9486800	Active TSS	Primary hematopoietic stem cells	blood
48	chr8:9486400-9487000	Enhancers	Fetal Intestine Small	intestine
49	chr8:9486400-9492200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr8:9486400-9493400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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