Variant report

Variant	rs13273771
Chromosome Location	chr8:9470415-9470416
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:9465333..9467954-chr8:9469565..9472084,2	MCF-7	breast:

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10090598	0.84[EUR][1000 genomes]
rs10109688	0.92[EUR][1000 genomes]
rs11774818	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11775432	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11776199	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11777891	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11780046	0.81[AMR][1000 genomes]
rs11780274	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11780757	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11784858	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11785485	0.86[AMR][1000 genomes]
rs11991547	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11994018	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12547639	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13249570	0.90[EUR][1000 genomes]
rs13250838	0.90[EUR][1000 genomes]
rs13256808	0.82[AMR][1000 genomes]
rs13256939	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13258733	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13261385	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13261660	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13263825	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13264510	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13265363	0.89[EUR][1000 genomes]
rs13267100	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13268770	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13270240	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13273330	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13274310	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13275867	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13276464	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13277588	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13280515	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13282049	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1393	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17150201	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17150206	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28696132	0.94[EUR][1000 genomes]
rs28711551	0.85[EUR][1000 genomes]
rs34074860	0.83[AMR][1000 genomes]
rs34095920	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34173677	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34182142	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34319155	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34374861	0.86[AMR][1000 genomes]
rs34393110	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34413242	0.89[EUR][1000 genomes]
rs34622193	0.84[AMR][1000 genomes]
rs34638238	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34679455	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34848966	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34926681	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34973657	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35017872	1.00[EUR][1000 genomes]
rs35054885	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35075657	0.84[AMR][1000 genomes]
rs35197051	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35361105	0.96[EUR][1000 genomes]
rs35599091	0.80[EUR][1000 genomes]
rs35617039	0.81[AMR][1000 genomes]
rs35700558	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35722901	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35812948	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35890521	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36090374	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4128324	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4263773	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4282576	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4376499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4458881	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4493906	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4535743	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4551359	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4570159	0.85[EUR][1000 genomes]
rs4840423	0.84[AMR][1000 genomes]
rs4840424	0.83[AMR][1000 genomes]
rs4840432	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4841172	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4841186	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4841194	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62493904	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62493905	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7013834	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71516518	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71516523	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7463594	0.90[EUR][1000 genomes]
rs7824880	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7839648	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9650636	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv497927	chr8:9097611-9544519	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9435600-9472400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:9435800-9472600	Weak transcription	HSMMtube	muscle
3	chr8:9439400-9472400	Weak transcription	HSMM	muscle
4	chr8:9450200-9470600	Weak transcription	NHLF	lung
5	chr8:9450200-9472200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:9450600-9480200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr8:9450800-9471000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr8:9455400-9470600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr8:9455400-9471800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr8:9460200-9470600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr8:9461000-9470800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr8:9461000-9486400	Weak transcription	Fetal Intestine Small	intestine
13	chr8:9462200-9473800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr8:9463000-9479800	Weak transcription	Dnd41	blood
15	chr8:9463200-9480600	Weak transcription	Primary T cells from cord blood	blood
16	chr8:9466200-9473000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr8:9466200-9480000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr8:9466200-9484400	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr8:9466400-9470600	Weak transcription	Brain Angular Gyrus	brain
20	chr8:9466400-9470800	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr8:9466400-9471800	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr8:9466400-9471800	Weak transcription	NHDF-Ad	bronchial
23	chr8:9466400-9472400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr8:9466400-9472600	Weak transcription	Primary B cells from cord blood	blood
25	chr8:9466400-9472600	Weak transcription	Pancreas	Pancrea
26	chr8:9466400-9472600	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr8:9466400-9479800	Weak transcription	Primary B cells from peripheral blood	blood
28	chr8:9466400-9483200	Weak transcription	Liver	Liver
29	chr8:9466400-9484200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr8:9466400-9485400	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr8:9466400-9491000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr8:9466800-9471600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr8:9467000-9470600	Weak transcription	Brain Hippocampus Middle	brain
34	chr8:9467000-9471000	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr8:9467000-9471200	Weak transcription	Rectal Smooth Muscle	rectum
36	chr8:9467000-9471800	Weak transcription	GM12878-XiMat	blood
37	chr8:9467000-9472000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr8:9467000-9472600	Weak transcription	Right Ventricle	heart
39	chr8:9467200-9470600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr8:9467200-9470600	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr8:9467200-9470600	Weak transcription	Brain Substantia Nigra	brain
42	chr8:9467200-9470600	Weak transcription	Colon Smooth Muscle	Colon
43	chr8:9467200-9471400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr8:9467200-9471600	Weak transcription	Brain Cingulate Gyrus	brain
45	chr8:9467800-9471600	Weak transcription	HUVEC	blood vessel
46	chr8:9468400-9472800	Enhancers	Primary T helper cells PMA-I stimulated	--
47	chr8:9468600-9472400	Weak transcription	Fetal Brain Female	brain
48	chr8:9468800-9471400	Weak transcription	Brain Germinal Matrix	brain
49	chr8:9468800-9472000	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr8:9468800-9472400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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