Variant report

Variant	rs35361105
Chromosome Location	chr8:9435308-9435309
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10090598	0.88[EUR][1000 genomes]
rs10109688	0.90[EUR][1000 genomes]
rs11774818	0.93[EUR][1000 genomes]
rs11775432	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11776199	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11777891	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11780046	0.81[AMR][1000 genomes]
rs11780274	0.89[EUR][1000 genomes]
rs11780757	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11781665	0.81[EUR][1000 genomes]
rs11784858	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11991547	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11994018	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12547639	0.92[EUR][1000 genomes]
rs13249570	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13250838	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13256939	0.93[EUR][1000 genomes]
rs13258733	0.97[EUR][1000 genomes]
rs13261385	0.82[EUR][1000 genomes]
rs13261660	0.83[EUR][1000 genomes]
rs13263825	0.96[EUR][1000 genomes]
rs13264510	0.82[EUR][1000 genomes]
rs13265363	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13267100	0.94[EUR][1000 genomes]
rs13268770	0.90[EUR][1000 genomes]
rs13270240	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13273330	0.93[EUR][1000 genomes]
rs13273771	0.96[EUR][1000 genomes]
rs13274310	0.96[EUR][1000 genomes]
rs13275867	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13276464	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13277588	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13280515	0.90[EUR][1000 genomes]
rs13282049	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1393	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1471203	0.86[AMR][1000 genomes]
rs17150201	0.83[EUR][1000 genomes]
rs17150206	0.86[EUR][1000 genomes]
rs28696132	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28711551	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34095920	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34173677	0.89[EUR][1000 genomes]
rs34182142	0.86[EUR][1000 genomes]
rs34319155	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34393110	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34413242	0.85[EUR][1000 genomes]
rs34638238	0.90[EUR][1000 genomes]
rs34679455	0.91[EUR][1000 genomes]
rs34848966	0.96[EUR][1000 genomes]
rs34926681	0.92[EUR][1000 genomes]
rs34973657	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35017872	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35054885	0.92[EUR][1000 genomes]
rs35197051	0.96[EUR][1000 genomes]
rs35700558	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35722901	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35812948	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35890521	0.97[EUR][1000 genomes]
rs36090374	0.85[EUR][1000 genomes]
rs4128324	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4263773	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4282576	0.93[EUR][1000 genomes]
rs4376499	0.96[EUR][1000 genomes]
rs4458881	0.93[EUR][1000 genomes]
rs4493906	0.92[EUR][1000 genomes]
rs4535743	0.90[EUR][1000 genomes]
rs4551359	0.96[EUR][1000 genomes]
rs4570159	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4840432	0.93[EUR][1000 genomes]
rs4841169	0.83[AMR][1000 genomes]
rs4841172	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4841186	0.93[EUR][1000 genomes]
rs4841194	0.89[EUR][1000 genomes]
rs55797444	0.86[AMR][1000 genomes]
rs62493904	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62493905	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7009486	0.83[AMR][1000 genomes]
rs7013834	0.97[EUR][1000 genomes]
rs71516518	0.94[EUR][1000 genomes]
rs71516523	0.90[EUR][1000 genomes]
rs7388554	0.87[AMR][1000 genomes]
rs7463594	0.89[EUR][1000 genomes]
rs7824880	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7839648	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9650636	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv497927	chr8:9097611-9544519	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9414400-9459600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:9415000-9435400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr8:9417200-9450000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr8:9417600-9437600	Weak transcription	Dnd41	blood
5	chr8:9422200-9438400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr8:9424800-9440000	Weak transcription	Fetal Lung	lung
7	chr8:9427400-9450000	Weak transcription	Thymus	Thymus
8	chr8:9428000-9435400	Weak transcription	Fetal Muscle Leg	muscle
9	chr8:9428200-9435400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr8:9428200-9435400	Weak transcription	Gastric	stomach
11	chr8:9428200-9466200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr8:9428400-9435400	Weak transcription	Left Ventricle	heart
13	chr8:9428400-9450000	Weak transcription	Psoas Muscle	Psoas
14	chr8:9429000-9437200	Weak transcription	Brain Angular Gyrus	brain
15	chr8:9429000-9450000	Weak transcription	Fetal Kidney	kidney
16	chr8:9429200-9437800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr8:9430200-9442400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr8:9430200-9449800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr8:9430600-9440400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr8:9431000-9440000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr8:9431000-9447000	Weak transcription	Brain Substantia Nigra	brain
22	chr8:9431000-9448800	Weak transcription	Rectal Smooth Muscle	rectum
23	chr8:9431000-9449400	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr8:9431000-9450000	Weak transcription	Colon Smooth Muscle	Colon
25	chr8:9431800-9437400	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr8:9432000-9435400	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr8:9432000-9444400	Weak transcription	NHEK	skin
28	chr8:9432000-9448200	Weak transcription	Fetal Brain Male	brain
29	chr8:9432400-9438200	Weak transcription	Osteobl	bone
30	chr8:9432600-9435400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr8:9432600-9438000	Weak transcription	HMEC	breast
32	chr8:9432600-9438200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr8:9432600-9438400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr8:9433200-9435400	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr8:9433200-9435800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr8:9433400-9435600	Enhancers	Primary B cells from peripheral blood	blood
37	chr8:9433600-9435400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
38	chr8:9433600-9435800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
39	chr8:9433600-9437200	Weak transcription	Fetal Muscle Trunk	muscle
40	chr8:9433600-9461000	Weak transcription	Fetal Stomach	stomach
41	chr8:9434200-9435600	Enhancers	Primary hematopoietic stem cells	blood
42	chr8:9434200-9436000	Enhancers	Primary T helper cells fromperipheralblood	blood
43	chr8:9434400-9435800	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr8:9434600-9435400	Enhancers	Primary monocytes fromperipheralblood	blood
45	chr8:9434600-9435400	Enhancers	Primary hematopoietic stem cells short term culture	blood
46	chr8:9434600-9435600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr8:9434600-9435800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
48	chr8:9434600-9435800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr8:9434600-9435800	Enhancers	Brain Anterior Caudate	brain
50	chr8:9434600-9435800	Enhancers	HepG2	liver

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