Variant report

Variant	rs11781665
Chromosome Location	chr8:9407462-9407463
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10090598	0.85[EUR][1000 genomes]
rs10094314	0.85[EUR][1000 genomes]
rs11774818	0.88[CEU][hapmap];0.86[CHB][hapmap]
rs11775432	0.90[CEU][hapmap];0.86[CHB][hapmap]
rs11777891	0.82[EUR][1000 genomes]
rs11780046	0.97[EUR][1000 genomes]
rs11780274	0.87[CEU][hapmap];0.87[CHB][hapmap]
rs11784858	0.81[EUR][1000 genomes]
rs11785485	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11991547	0.90[CEU][hapmap];0.81[CHB][hapmap]
rs11994018	0.87[CEU][hapmap];0.87[CHB][hapmap]
rs13250838	0.85[CEU][hapmap]
rs13256939	0.81[AMR][1000 genomes]
rs13258733	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13259379	0.90[CEU][hapmap]
rs13261385	0.90[CEU][hapmap];0.80[CHB][hapmap]
rs13261395	0.95[EUR][1000 genomes]
rs13261660	0.83[EUR][1000 genomes]
rs13264510	0.89[CEU][hapmap]
rs13265363	0.87[CHB][hapmap]
rs13270240	0.81[EUR][1000 genomes]
rs13274310	0.85[CEU][hapmap];0.81[AMR][1000 genomes]
rs1393	0.87[CEU][hapmap];0.87[CHB][hapmap]
rs1471203	0.82[CEU][hapmap];0.90[EUR][1000 genomes]
rs17150201	0.83[EUR][1000 genomes]
rs17150206	0.86[EUR][1000 genomes]
rs34095920	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34374861	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34393110	0.81[EUR][1000 genomes]
rs34622193	0.94[EUR][1000 genomes]
rs34848966	0.81[AMR][1000 genomes]
rs35075657	0.97[EUR][1000 genomes]
rs35197051	0.81[AMR][1000 genomes]
rs35200157	0.95[EUR][1000 genomes]
rs35361105	0.81[EUR][1000 genomes]
rs35565635	0.91[EUR][1000 genomes]
rs35617039	0.91[EUR][1000 genomes]
rs35890521	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4128324	0.87[CEU][hapmap];0.87[CHB][hapmap]
rs4272381	0.87[CHB][hapmap]
rs4535743	0.87[CHB][hapmap]
rs4551359	0.86[CEU][hapmap];0.85[CHB][hapmap]
rs4570159	0.86[CEU][hapmap];0.85[CHB][hapmap]
rs4840423	0.97[EUR][1000 genomes]
rs4840424	0.97[EUR][1000 genomes]
rs4840432	0.88[CEU][hapmap]
rs4841169	0.91[EUR][1000 genomes]
rs4841171	0.95[EUR][1000 genomes]
rs4841186	0.90[CEU][hapmap];0.86[CHB][hapmap]
rs4841195	0.87[CHB][hapmap]
rs55797444	0.90[EUR][1000 genomes]
rs6601328	0.95[EUR][1000 genomes]
rs7009486	0.91[EUR][1000 genomes]
rs7013834	0.87[CEU][hapmap];0.81[CHB][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs71516518	0.81[AMR][1000 genomes]
rs7388554	0.92[EUR][1000 genomes]
rs7839648	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv497927	chr8:9097611-9544519	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1030524	chr8:9183482-9412833	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1033031	chr8:9310266-9418941	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9390000-9409800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:9404000-9412000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr8:9404800-9412800	Weak transcription	Right Atrium	heart
4	chr8:9407400-9407800	Enhancers	Fetal Intestine Large	intestine
5	chr8:9407400-9409000	Enhancers	Fetal Intestine Small	intestine

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