Variant report

Variant	rs17740794
Chromosome Location	chr2:173742348-173742349
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs34469004	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3754764	0.83[EUR][1000 genomes]
rs3769286	0.81[EUR][1000 genomes]
rs3769292	0.81[EUR][1000 genomes]
rs3769293	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56156353	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56312615	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58541680	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72906197	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908203	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv834459	chr2:173735192-173926750	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173726800-173753600	Weak transcription	Brain Angular Gyrus	brain
2	chr2:173734400-173747000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr2:173736200-173742400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:173736200-173742400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr2:173736200-173742400	Weak transcription	NHEK	skin
6	chr2:173742200-173743000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr2:173742200-173743200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr2:173742200-173743200	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
9	chr2:173742200-173743200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr2:173742200-173743400	Enhancers	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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