Variant report

Variant	rs58541680
Chromosome Location	chr2:173753946-173753947
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17740794	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34469004	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3754764	0.83[EUR][1000 genomes]
rs3769286	0.81[EUR][1000 genomes]
rs3769292	0.81[EUR][1000 genomes]
rs3769293	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56156353	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56312615	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72906197	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908203	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv834459	chr2:173735192-173926750	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173742600-173755000	Weak transcription	Left Ventricle	heart
2	chr2:173743000-173756400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr2:173750600-173754600	Weak transcription	Fetal Stomach	stomach
4	chr2:173750800-173754600	Weak transcription	Fetal Muscle Leg	muscle
5	chr2:173750800-173756200	Weak transcription	Lung	lung
6	chr2:173752200-173756400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr2:173753200-173754200	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr2:173753200-173755600	Enhancers	HSMMtube	muscle
9	chr2:173753200-173757600	Enhancers	Fetal Heart	heart
10	chr2:173753400-173754200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr2:173753400-173754400	Enhancers	Brain Germinal Matrix	brain
12	chr2:173753600-173754400	Enhancers	Brain Angular Gyrus	brain
13	chr2:173753600-173754800	Enhancers	Fetal Lung	lung
14	chr2:173753800-173754600	Weak transcription	Right Atrium	heart
15	chr2:173753800-173754800	Enhancers	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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