Variant report

Variant	rs3769292
Chromosome Location	chr2:173726259-173726260
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173706643..173709122-chr2:173725202..173727159,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16860965	0.85[CEU][hapmap]
rs17740794	0.81[EUR][1000 genomes]
rs2194715	1.00[CHB][hapmap];0.94[CHD][hapmap];0.83[ASN][1000 genomes]
rs34469004	0.93[CEU][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs3754762	0.87[CHD][hapmap]
rs3754764	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3769274	0.86[ASN][1000 genomes]
rs3769286	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3769293	0.90[EUR][1000 genomes]
rs3769294	0.89[ASN][1000 genomes]
rs3769298	0.84[ASN][1000 genomes]
rs3769302	1.00[CHB][hapmap]
rs58541680	0.81[EUR][1000 genomes]
rs59080171	0.84[ASN][1000 genomes]
rs724997	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs72906197	0.90[EUR][1000 genomes]
rs72908203	0.90[EUR][1000 genomes]
rs73977711	0.83[ASN][1000 genomes]
rs956752	1.00[ASW][hapmap];0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.95[MKK][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173722200-173727400	Enhancers	Fetal Heart	heart
2	chr2:173723400-173728800	Weak transcription	Pancreas	Pancrea
3	chr2:173724200-173727800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr2:173724400-173727800	Enhancers	Fetal Stomach	stomach
5	chr2:173724800-173726600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr2:173724800-173727800	Enhancers	Fetal Lung	lung
7	chr2:173725000-173728000	Weak transcription	Fetal Intestine Small	intestine
8	chr2:173725200-173726400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr2:173725200-173727400	Weak transcription	Adipose Nuclei	Adipose
10	chr2:173725200-173728000	Weak transcription	Fetal Intestine Large	intestine
11	chr2:173725400-173726400	Weak transcription	Ovary	ovary
12	chr2:173725600-173726800	Enhancers	Right Ventricle	heart
13	chr2:173725600-173727600	Enhancers	Brain Germinal Matrix	brain
14	chr2:173725600-173727800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr2:173725800-173726400	Flanking Active TSS	Brain Angular Gyrus	brain
16	chr2:173725800-173726600	Flanking Active TSS	Hela-S3	cervix
17	chr2:173725800-173726800	Enhancers	Left Ventricle	heart
18	chr2:173725800-173727000	Enhancers	Fetal Muscle Leg	muscle
19	chr2:173725800-173727800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr2:173725800-173728600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr2:173726000-173726400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr2:173726000-173726600	Enhancers	Brain Cingulate Gyrus	brain
23	chr2:173726000-173726600	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr2:173726000-173726800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr2:173726000-173726800	Enhancers	Psoas Muscle	Psoas
26	chr2:173726000-173727000	Enhancers	Fetal Brain Female	brain
27	chr2:173726000-173727800	Enhancers	Brain Anterior Caudate	brain
28	chr2:173726000-173734400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr2:173726200-173726600	Weak transcription	Gastric	stomach
30	chr2:173726200-173727200	Enhancers	Brain Substantia Nigra	brain
31	chr2:173726200-173727400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr2:173726200-173727400	Weak transcription	Brain Hippocampus Middle	brain
33	chr2:173726200-173727800	Enhancers	Right Atrium	heart
34	chr2:173726200-173734400	Weak transcription	NHEK	skin
35	chr2:173726200-173734600	Weak transcription	HUVEC	blood vessel

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