Variant report

Variant	rs59080171
Chromosome Location	chr2:173733708-173733709
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs2194715	0.81[ASN][1000 genomes]
rs3754760	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3754761	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3754762	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3754763	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3754764	0.89[ASN][1000 genomes]
rs3769265	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3769268	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3769277	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3769278	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3769280	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3769281	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3769286	0.89[ASN][1000 genomes]
rs3769291	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3769292	0.84[ASN][1000 genomes]
rs3769294	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3769298	0.83[ASN][1000 genomes]
rs55759167	0.87[EUR][1000 genomes]
rs55923901	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56884890	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57440334	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs724997	0.81[ASN][1000 genomes]
rs73977711	0.81[ASN][1000 genomes]
rs73977720	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73977722	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73977726	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73977727	0.87[EUR][1000 genomes]
rs73977729	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs956752	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173726000-173734400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr2:173726200-173734400	Weak transcription	NHEK	skin
3	chr2:173726200-173734600	Weak transcription	HUVEC	blood vessel
4	chr2:173726800-173753600	Weak transcription	Brain Angular Gyrus	brain
5	chr2:173729000-173735000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr2:173729200-173737000	Weak transcription	Fetal Intestine Small	intestine
7	chr2:173733400-173733800	Enhancers	Fetal Intestine Large	intestine
8	chr2:173733400-173734400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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