Variant report

Variant	rs3769265
Chromosome Location	chr2:173777163-173777164
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs2194715	1.00[GIH][hapmap]
rs3754760	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3754761	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3754762	0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3754763	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3769268	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3769277	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3769278	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3769280	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3769281	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3769291	0.87[EUR][1000 genomes]
rs3769294	0.87[EUR][1000 genomes]
rs55759167	1.00[EUR][1000 genomes]
rs55923901	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56884890	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57440334	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59080171	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73977720	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73977722	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73977726	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73977727	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73977729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv834459	chr2:173735192-173926750	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173764400-173792600	Weak transcription	Fetal Intestine Small	intestine
2	chr2:173769200-173792400	Weak transcription	Fetal Kidney	kidney
3	chr2:173772000-173786000	Weak transcription	Right Atrium	heart
4	chr2:173774000-173786000	Weak transcription	Lung	lung
5	chr2:173775000-173783400	Weak transcription	GM12878-XiMat	blood
6	chr2:173775600-173778400	Enhancers	Thymus	Thymus
7	chr2:173775600-173779400	Enhancers	Fetal Thymus	thymus
8	chr2:173775600-173780200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr2:173776200-173777200	Weak transcription	Spleen	Spleen
10	chr2:173776600-173777400	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr2:173776600-173777800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr2:173776600-173777800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr2:173776600-173778200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr2:173776600-173779000	Enhancers	Primary T cells from cord blood	blood
15	chr2:173776800-173777800	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr2:173777000-173777200	Enhancers	Brain Angular Gyrus	brain
17	chr2:173777000-173777400	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr2:173777000-173777600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr2:173777000-173777600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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