Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs3754760	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3754761	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3754762	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3754763	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3769265	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3769268	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3769277	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3769278	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3769280	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3769281	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3769291	0.87[EUR][1000 genomes]
rs3769294	0.87[EUR][1000 genomes]
rs55759167	1.00[EUR][1000 genomes]
rs55923901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56884890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57440334	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59080171	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73977720	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73977722	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73977726	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73977727	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv834459	chr2:173735192-173926750	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173764400-173792600	Weak transcription	Fetal Intestine Small	intestine
2	chr2:173769200-173792400	Weak transcription	Fetal Kidney	kidney
3	chr2:173772000-173786000	Weak transcription	Right Atrium	heart
4	chr2:173774000-173786000	Weak transcription	Lung	lung
5	chr2:173775000-173783400	Weak transcription	GM12878-XiMat	blood
6	chr2:173775600-173778400	Enhancers	Thymus	Thymus
7	chr2:173775600-173779400	Enhancers	Fetal Thymus	thymus
8	chr2:173775600-173780200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr2:173776600-173777800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr2:173776600-173777800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr2:173776600-173778200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr2:173776600-173779000	Enhancers	Primary T cells from cord blood	blood
13	chr2:173776800-173777800	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr2:173777200-173788800	Weak transcription	Brain Angular Gyrus	brain
15	chr2:173777400-173778000	Enhancers	Primary T cells fromperipheralblood	blood
16	chr2:173777400-173781600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr2:173777600-173781400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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