Variant report

Variant	rs3754760
Chromosome Location	chr2:173773897-173773898
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173761351..173763071-chr2:173771156..173774150,2	MCF-7	breast:
2	chr2:173766798..173768997-chr2:173772353..173774444,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs2194715	1.00[GIH][hapmap]
rs3754761	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3754762	0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3754763	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3769265	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3769268	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3769277	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3769278	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3769280	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3769281	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3769291	0.87[EUR][1000 genomes]
rs3769294	0.87[EUR][1000 genomes]
rs55759167	1.00[EUR][1000 genomes]
rs55923901	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56884890	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57440334	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59080171	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73977720	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73977722	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73977726	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73977727	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73977729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv834459	chr2:173735192-173926750	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173764400-173792600	Weak transcription	Fetal Intestine Small	intestine
2	chr2:173764800-173776000	Weak transcription	Spleen	Spleen
3	chr2:173767000-173776600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr2:173769200-173792400	Weak transcription	Fetal Kidney	kidney
5	chr2:173771400-173777000	Weak transcription	Brain Angular Gyrus	brain
6	chr2:173771600-173775600	Weak transcription	Fetal Thymus	thymus
7	chr2:173771600-173776600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr2:173771600-173777000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr2:173771800-173774600	Weak transcription	Fetal Muscle Trunk	muscle
10	chr2:173772000-173786000	Weak transcription	Right Atrium	heart
11	chr2:173773400-173774000	Enhancers	Lung	lung
12	chr2:173773600-173775000	Enhancers	GM12878-XiMat	blood

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