Variant report

Variant	rs3769281
Chromosome Location	chr2:173748601-173748602
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173744609..173748385-chr2:173748437..173752260,4	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs3754760	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3754761	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3754762	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3754763	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3754764	0.81[ASN][1000 genomes]
rs3769265	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3769268	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3769274	0.87[ASN][1000 genomes]
rs3769277	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3769278	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3769280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3769286	0.81[ASN][1000 genomes]
rs3769291	0.87[EUR][1000 genomes]
rs3769294	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55759167	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55923901	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56884890	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57440334	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59080171	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73977720	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73977722	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73977726	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73977727	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73977729	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv834459	chr2:173735192-173926750	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173726800-173753600	Weak transcription	Brain Angular Gyrus	brain
2	chr2:173742600-173755000	Weak transcription	Left Ventricle	heart
3	chr2:173743000-173756400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr2:173748600-173749400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:173748600-173750000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr2:173748600-173750000	Enhancers	NHEK	skin
7	chr2:173748600-173750200	Enhancers	HSMMtube	muscle

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