Variant report

Variant	rs3754762
Chromosome Location	chr2:173758805-173758806
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173752920..173755740-chr2:173756262..173759255,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DLX2-11	chr2:173758491-173759111	NONHSAT075523

Variant related genes	Relation type
ENSG00000091428	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs2194715	0.81[CHD][hapmap]
rs3754760	0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3754761	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3754763	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3754764	0.81[ASN][1000 genomes]
rs3769265	0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3769268	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3769274	0.87[ASN][1000 genomes]
rs3769277	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3769278	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3769280	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3769281	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3769286	0.81[ASN][1000 genomes]
rs3769291	0.87[EUR][1000 genomes]
rs3769292	0.87[CHD][hapmap]
rs3769294	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55759167	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55923901	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56884890	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57440334	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59080171	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73977720	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73977722	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73977726	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73977727	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73977729	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs956752	0.87[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv834459	chr2:173735192-173926750	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173754400-173759400	Weak transcription	Brain Angular Gyrus	brain
2	chr2:173756400-173760800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr2:173757200-173759800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr2:173757400-173763200	Weak transcription	Left Ventricle	heart
5	chr2:173757600-173759400	Weak transcription	Fetal Kidney	kidney
6	chr2:173757600-173763400	Weak transcription	Right Atrium	heart
7	chr2:173758000-173761200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr2:173758400-173759200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr2:173758400-173760000	Enhancers	Brain Substantia Nigra	brain
10	chr2:173758400-173761200	Enhancers	Brain Germinal Matrix	brain
11	chr2:173758600-173760200	Enhancers	Brain Anterior Caudate	brain
12	chr2:173758600-173763000	Weak transcription	Lung	lung
13	chr2:173758800-173759000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr2:173758800-173759000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr2:173758800-173759000	Enhancers	Fetal Thymus	thymus
16	chr2:173758800-173759200	Bivalent Enhancer	Brain Cingulate Gyrus	brain
17	chr2:173758800-173760400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr2:173758800-173760400	Enhancers	Adipose Nuclei	Adipose
19	chr2:173758800-173760800	Enhancers	Brain Inferior Temporal Lobe	brain

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