Variant report

Variant	rs17745474
Chromosome Location	chr11:85836969-85836970
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85834004..85837097-chr11:85843362..85846409,3	K562	blood:
2	chr11:85829897..85832086-chr11:85836791..85838653,2	K562	blood:
3	chr11:85659346..85662146-chr11:85836762..85839271,2	K562	blood:
4	chr11:85836520..85838381-chr11:85894260..85896246,2	K562	blood:
5	chr11:85827002..85832130-chr11:85832527..85838500,7	MCF-7	breast:
6	chr11:85835506..85837110-chr11:85837599..85840218,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10128700	0.93[CEU][hapmap]
rs10501603	0.88[CEU][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];0.97[TSI][hapmap]
rs10501605	0.94[CEU][hapmap]
rs10898431	0.88[CEU][hapmap]
rs11234513	0.88[CEU][hapmap]
rs11234517	0.88[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.97[TSI][hapmap]
rs11234544	0.94[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11234548	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12270433	0.81[EUR][1000 genomes]
rs12271390	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12276435	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12277986	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12281494	0.87[EUR][1000 genomes]
rs12282655	0.85[EUR][1000 genomes]
rs12284629	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs12292364	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12294130	0.88[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17159904	0.83[CEU][hapmap];0.86[GIH][hapmap];0.88[TSI][hapmap]
rs17745105	0.94[CEU][hapmap]
rs17745153	0.88[CEU][hapmap]
rs17745236	0.86[CEU][hapmap]
rs17745273	0.94[CEU][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap]
rs17817690	0.94[CEU][hapmap]
rs17817859	0.94[CEU][hapmap]
rs17817919	0.88[CEU][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap]
rs17817956	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2001241	0.85[EUR][1000 genomes]
rs4943937	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs4944550	1.00[CEU][hapmap]
rs4944551	0.87[CEU][hapmap]
rs4944552	0.88[CEU][hapmap]
rs4944555	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs4944556	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs55791429	0.83[EUR][1000 genomes]
rs56187740	0.82[EUR][1000 genomes]
rs72950443	0.85[EUR][1000 genomes]
rs72950453	0.85[EUR][1000 genomes]
rs72950456	0.85[EUR][1000 genomes]
rs72959906	0.87[EUR][1000 genomes]
rs72959929	0.96[EUR][1000 genomes]
rs72965157	0.81[EUR][1000 genomes]
rs72965166	0.85[EUR][1000 genomes]
rs7943152	1.00[CEU][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs17745474	FAM181B	cis	parietal	SCAN
rs17745474	PICALM	cis	cerebellum	SCAN
rs17745474	PICALM	Cis_1M	lymphoblastoid	RTeQTL
rs17745474	GRM5	cis	cerebellum	SCAN
rs17745474	CCDC83	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85824800-85837600	Weak transcription	Brain Angular Gyrus	brain
2	chr11:85832800-85838200	Enhancers	Placenta	Placenta
3	chr11:85835600-85837800	Weak transcription	Fetal Intestine Large	intestine
4	chr11:85835600-85838600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:85835800-85845600	Weak transcription	Brain Anterior Caudate	brain
6	chr11:85836000-85837600	Weak transcription	Ovary	ovary
7	chr11:85836200-85838000	Weak transcription	HepG2	liver
8	chr11:85836200-85839600	Weak transcription	K562	blood
9	chr11:85836800-85837000	Enhancers	A549	lung
10	chr11:85836800-85839200	Enhancers	Brain Inferior Temporal Lobe	brain

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