Variant report

Variant	rs11234548
Chromosome Location	chr11:85818750-85818751
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85812308..85815576-chr11:85816844..85820250,5	K562	blood:
2	chr11:85752580..85755769-chr11:85817812..85820593,3	K562	blood:
3	chr11:85816871..85820639-chr11:85825942..85829677,4	K562	blood:
4	chr11:85752580..85754495-chr11:85817812..85820593,2	K562	blood:
5	chr11:85817821..85819843-chr11:85853370..85855067,2	K562	blood:
6	chr11:85807871..85809487-chr11:85818248..85819778,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10128700	0.81[EUR][1000 genomes]
rs10160830	0.89[YRI][hapmap]
rs11234544	0.80[YRI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12270433	0.82[EUR][1000 genomes]
rs12271390	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12276435	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12277986	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12281494	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12282655	0.87[EUR][1000 genomes]
rs12284629	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12292364	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12294130	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17159904	0.81[EUR][1000 genomes]
rs17745248	0.81[EUR][1000 genomes]
rs17745273	0.81[EUR][1000 genomes]
rs17745474	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17817919	0.80[EUR][1000 genomes]
rs17817956	0.84[EUR][1000 genomes]
rs2001241	0.87[EUR][1000 genomes]
rs3889743	0.88[YRI][hapmap]
rs4943937	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4944555	0.83[EUR][1000 genomes]
rs4944556	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55791429	0.84[EUR][1000 genomes]
rs55815523	0.81[EUR][1000 genomes]
rs56187740	0.83[EUR][1000 genomes]
rs56207019	0.82[EUR][1000 genomes]
rs7128598	0.82[EUR][1000 genomes]
rs72950443	0.86[EUR][1000 genomes]
rs72950453	0.87[EUR][1000 genomes]
rs72950456	0.87[EUR][1000 genomes]
rs72959906	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72959929	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72965157	0.82[EUR][1000 genomes]
rs72965166	0.86[EUR][1000 genomes]
rs7943152	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85813600-85826600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:85818200-85818800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:85818200-85818800	Enhancers	Osteobl	bone
4	chr11:85818200-85819200	Enhancers	K562	blood
5	chr11:85818400-85819200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:85818400-85820200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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