Variant report

Variant	rs72965166
Chromosome Location	chr11:85767800-85767801
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85764603..85768167-chr11:85770443..85773239,4	K562	blood:
2	chr11:85763399..85766390-chr11:85766683..85769520,2	K562	blood:
3	chr11:85763624..85765571-chr11:85766544..85768269,2	MCF-7	breast:
4	chr11:85759677..85764331-chr11:85767246..85771680,6	K562	blood:

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10128700	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10501603	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10501605	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10501607	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10898431	0.83[EUR][1000 genomes]
rs11234489	0.85[EUR][1000 genomes]
rs11234492	0.85[EUR][1000 genomes]
rs11234496	0.87[EUR][1000 genomes]
rs11234502	0.88[EUR][1000 genomes]
rs11234512	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11234513	0.88[EUR][1000 genomes]
rs11234517	0.88[EUR][1000 genomes]
rs11234544	0.86[EUR][1000 genomes]
rs11234548	0.86[EUR][1000 genomes]
rs12270433	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12271390	0.86[EUR][1000 genomes]
rs12276435	0.86[EUR][1000 genomes]
rs12277986	0.86[EUR][1000 genomes]
rs12278260	0.84[EUR][1000 genomes]
rs12279956	0.88[EUR][1000 genomes]
rs12281494	0.93[EUR][1000 genomes]
rs12281958	0.88[EUR][1000 genomes]
rs12282655	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12284629	0.86[EUR][1000 genomes]
rs12287170	0.88[EUR][1000 genomes]
rs12292364	0.85[EUR][1000 genomes]
rs12294130	0.85[EUR][1000 genomes]
rs1596739	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17159904	0.88[EUR][1000 genomes]
rs17744938	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17745105	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17745153	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17745236	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17745248	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17745273	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17745474	0.85[EUR][1000 genomes]
rs17817582	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17817588	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17817690	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17817859	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17817883	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17817919	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17817956	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2001241	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2084077	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs41381550	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4943934	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4943936	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4943937	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4944550	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4944551	0.82[EUR][1000 genomes]
rs4944552	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4944553	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4944554	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4944555	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4944556	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55697624	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55791429	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55815523	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56026701	0.90[EUR][1000 genomes]
rs56187740	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56207019	0.86[EUR][1000 genomes]
rs57125313	0.85[EUR][1000 genomes]
rs58937798	0.90[EUR][1000 genomes]
rs7128598	0.86[EUR][1000 genomes]
rs72949419	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72949443	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72950443	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72950453	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72950456	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72951266	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72951268	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72959177	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72959197	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72959906	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72959929	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72961110	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72961111	0.82[EUR][1000 genomes]
rs72963077	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72963086	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72963092	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72965157	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7943152	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035489	chr11:85502953-85778229	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv898054	chr11:85683554-85772636	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv468774	chr11:85688209-85775059	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv555644	chr11:85688209-85775059	Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv1829985	chr11:85740319-85789350	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
7	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85752400-85768400	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr11:85752800-85768200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr11:85752800-85776400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr11:85753200-85768000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr11:85754400-85768200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr11:85756000-85776000	Weak transcription	Esophagus	oesophagus
7	chr11:85756600-85775400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:85758600-85774400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:85759000-85773600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr11:85759400-85768200	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr11:85759400-85773800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr11:85759400-85774400	Weak transcription	NHEK	skin
13	chr11:85759800-85772600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:85760200-85773000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:85760400-85772000	Weak transcription	Pancreas	Pancrea
16	chr11:85761000-85768800	Genic enhancers	K562	blood
17	chr11:85761400-85768000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr11:85762200-85773800	Weak transcription	NHDF-Ad	bronchial
19	chr11:85762400-85773000	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr11:85763200-85772800	Weak transcription	NHLF	lung
21	chr11:85763800-85767800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr11:85763800-85768000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr11:85764000-85775000	Weak transcription	Fetal Brain Female	brain
24	chr11:85764200-85774800	Weak transcription	HMEC	breast
25	chr11:85764200-85775200	Weak transcription	Fetal Intestine Small	intestine
26	chr11:85764400-85769400	Weak transcription	Small Intestine	intestine
27	chr11:85764400-85770400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr11:85764400-85771600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr11:85764400-85772600	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr11:85764400-85777000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr11:85764600-85769400	Weak transcription	Stomach Mucosa	stomach
32	chr11:85764600-85770600	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr11:85765000-85773000	Enhancers	Primary neutrophils fromperipheralblood	blood
34	chr11:85765000-85773200	Weak transcription	Lung	lung
35	chr11:85765400-85769400	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr11:85765600-85768800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr11:85765600-85768800	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr11:85765600-85770000	Weak transcription	Stomach Smooth Muscle	stomach
39	chr11:85765600-85770400	Weak transcription	Gastric	stomach
40	chr11:85765600-85770600	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr11:85765600-85770600	Weak transcription	Ovary	ovary
42	chr11:85765600-85771200	Weak transcription	HepG2	liver
43	chr11:85765600-85771200	Weak transcription	HUVEC	blood vessel
44	chr11:85765600-85772400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr11:85765600-85773200	Weak transcription	Spleen	Spleen
46	chr11:85765600-85773800	Weak transcription	Dnd41	blood
47	chr11:85765600-85775400	Weak transcription	Placenta	Placenta
48	chr11:85765600-85777800	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr11:85765800-85768400	Enhancers	Monocytes-CD14+_RO01746	blood
50	chr11:85765800-85769400	Weak transcription	Rectal Smooth Muscle	rectum

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