Variant report
Variant | rs7128598 |
---|---|
Chromosome Location | chr11:85795131-85795132 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10128700 | 0.82[CEU][hapmap];0.81[EUR][1000 genomes] |
rs10501605 | 0.83[CEU][hapmap] |
rs10898431 | 0.88[CEU][hapmap];0.86[EUR][1000 genomes] |
rs11234544 | 0.87[CEU][hapmap];0.82[EUR][1000 genomes] |
rs11234548 | 0.82[EUR][1000 genomes] |
rs12270433 | 0.82[EUR][1000 genomes] |
rs12271390 | 0.82[EUR][1000 genomes] |
rs12276435 | 0.82[EUR][1000 genomes] |
rs12277986 | 0.82[EUR][1000 genomes] |
rs12281494 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs12282655 | 0.86[EUR][1000 genomes] |
rs12284629 | 0.87[CEU][hapmap];0.82[EUR][1000 genomes] |
rs12294130 | 0.81[CEU][hapmap];0.81[EUR][1000 genomes] |
rs17159904 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs17745105 | 0.83[CEU][hapmap] |
rs17745248 | 0.81[EUR][1000 genomes] |
rs17745273 | 0.81[CEU][hapmap];0.81[EUR][1000 genomes] |
rs17817690 | 0.83[CEU][hapmap] |
rs17817859 | 0.83[CEU][hapmap] |
rs17817956 | 0.94[CEU][hapmap];0.84[EUR][1000 genomes] |
rs2001241 | 0.86[EUR][1000 genomes] |
rs4943937 | 0.87[CEU][hapmap];0.90[EUR][1000 genomes] |
rs4944550 | 0.94[CEU][hapmap] |
rs4944555 | 0.82[EUR][1000 genomes] |
rs4944556 | 0.87[CEU][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs55791429 | 0.84[EUR][1000 genomes] |
rs55815523 | 0.80[EUR][1000 genomes] |
rs56187740 | 0.83[EUR][1000 genomes] |
rs56207019 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs72950443 | 0.86[EUR][1000 genomes] |
rs72950453 | 0.86[EUR][1000 genomes] |
rs72950456 | 0.86[EUR][1000 genomes] |
rs72959906 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs72959929 | 0.82[EUR][1000 genomes] |
rs72965157 | 0.82[EUR][1000 genomes] |
rs72965166 | 0.86[EUR][1000 genomes] |
rs7927222 | 0.94[CEU][hapmap] |
rs7943152 | 0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1050948 | chr11:85756325-85968665 | Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
2 | nsv541117 | chr11:85756325-85968665 | Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr11:85781400-85796000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
2 | chr11:85791600-85801200 | Weak transcription | Pancreas | Pancrea |