Variant report

No.	Distal block	Cell Line	Cell type
1	chr11:32465131..32467084-chr11:32469130..32471983,4	K562	blood:
2	chr11:32468457..32470421-chr11:32472103..32475103,3	K562	blood:
3	chr11:32469563..32470369-chr11:32583163..32583671,2	MCF-7	breast:
4	chr11:32407695..32408684-chr11:32469407..32470404,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10219285	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11031799	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11031800	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11031801	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11031813	1.00[ASN][1000 genomes]
rs12271863	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12272661	1.00[ASN][1000 genomes]
rs12276814	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12277550	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12282084	0.90[EUR][1000 genomes]
rs12789194	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12790633	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12794418	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12798270	0.83[EUR][1000 genomes]
rs12805730	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12808723	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35128594	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35245711	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6508	0.83[GIH][hapmap];0.82[JPT][hapmap]
rs7105964	1.00[JPT][hapmap]
rs7113208	0.87[EUR][1000 genomes]
rs7115617	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71466594	1.00[ASN][1000 genomes]
rs9300011	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9300012	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9300013	1.00[ASN][1000 genomes]
rs9651595	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832108	chr11:32395937-32560583	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2753303	chr11:32447324-32494924	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs17748371	ELP4	cis	lymphoblastoid	seeQTL
rs17748371	FAT1	trans	lymphoblastoid	seeQTL
rs17748371	FLJ23152	trans	lymphoblastoid	seeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32468800-32471400	Enhancers	K562	blood
2	chr11:32469000-32487800	Weak transcription	Ovary	ovary
3	chr11:32469200-32470000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr11:32469600-32470200	Weak transcription	Dnd41	blood

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